Pre_GI: BLASTN Hits

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Query: NC_007925:2892371 Rhodopseudomonas palustris BisB18, complete genome

Start: 2892371, End: 2911631, Length: 19261

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Four different strains were isolated from 2 sites, one pristine and one polluted. Environmental bacterium with potential use in bioremediation. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004463:55409245540924556841727494Bradyrhizobium japonicum USDA 110, complete genome3e-175622BLASTN svgBLASTP svg
NC_010172:3413392*3413392343676823377Methylobacterium extorquens PA1, complete genome8e-148531BLASTN svgBLASTP svg
NC_007404:15700001570000159185021851Thiobacillus denitrificans ATCC 25259, complete genome7e-62246BLASTN svgBLASTP svg
NC_008786:3323167*3323167337505651890Verminephrobacter eiseniae EF01-2, complete genome1e-48202BLASTN svgBLASTP svg
NC_013595:48000048000050266322664Streptosporangium roseum DSM 43021, complete genome1e-44188BLASTN svgBLASTP svg
NC_007086:10321071032107105609923993Xanthomonas campestris pv. campestris str. 8004, complete genome2e-40174BLASTN svgBLASTP svg
NC_003902:39060113906011393272426714Xanthomonas campestris pv. campestris str. ATCC 33913, complete2e-40174BLASTN svgBLASTP svg
NC_003155:5616000*5616000564050424505Streptomyces avermitilis MA-4680, complete genome1e-35159BLASTN svgBLASTP svg
NC_007508:40678624067862409485926998Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome2e-31145BLASTN svgBLASTP svg
NC_010572:3878660*3878660390047621817Streptomyces griseus subsp. griseus NBRC 13350, complete genome8e-31143BLASTN svgBLASTP svg
NC_009454:28018082801808282091519108Pelotomaculum thermopropionicum SI, complete genome5e-26127BLASTN svgBLASTP svg
NC_007925:4756236*4756236477957123336Rhodopseudomonas palustris BisB18, complete genome7e-22113BLASTN svgBLASTP svg
NC_015717:24793942479394250178522392Hyphomicrobium sp. MC1, complete genome3e-21111BLASTN svgBLASTP svg
NC_011894:71093747109374713217722804Methylobacterium nodulans ORS 2060, complete genome3e-18101BLASTN svgBLASTP svg
NC_002516:24363042436304246509928796Pseudomonas aeruginosa PAO1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_013665:19220001922000195809936100Methanocella paludicola SANAE, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_013716:22551022255102228502629925Citrobacter rodentium ICC168, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013282:28277572827757286060332847Cronobacter turicensis, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007925:1448726*1448726147412025395Rhodopseudomonas palustris BisB18, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009792:71495371495374483829886Citrobacter koseri ATCC BAA-895, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_011894:3988500*3988500401357725078Methylobacterium nodulans ORS 2060, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_002655:28396002839600287010630507Escherichia coli O157:H7 EDL933, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome6e-1073.8BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome6e-1073.8BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome6e-1073.8BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_002695:27693872769387279989230506Escherichia coli O157:H7 str. Sakai, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_004663:4373902*4373902439645322552Bacteroides thetaiotaomicron VPI-5482, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_011757:44453434445343447709931757Methylobacterium chloromethanicum CM4, complete genome6e-1073.8BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_007644:416000*41600044601230013Moorella thermoacetica ATCC 39073, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_014958:33938553393855341275318899Deinococcus maricopensis DSM 21211 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_014121:33996853399685343519435510Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete4e-0867.9BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_004337:20987362098736212859929864Shigella flexneri 2a str. 301, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_004741:20816492081649211300631358Shigella flexneri 2a str. 2457T, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007712:16014991601499163292631428Sodalis glossinidius str. 'morsitans', complete genome1e-0765.9BLASTN svgBLASTP svg
NC_008258:21006462100646213188931244Shigella flexneri 5 str. 8401, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_008781:3365468*3365468340127235805Polaromonas naphthalenivorans CJ2, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_006138:1571878*1571878159099419117Desulfotalea psychrophila LSv54, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013730:90638990638993303226644Spirosoma linguale DSM 74, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014924:32705473270547329089620350Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014216:20548602054860208268227823Desulfurivibrio alkaliphilus AHT2 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_011901:2202690*2202690223230229613Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete9e-0660BLASTN svgBLASTP svg
NC_007951:2206263*2206263222784621584Burkholderia xenovorans LB400 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg