Pre_GI: BLASTN Hits

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Query: NC_007333:39579 Thermobifida fusca YX, complete genome

Start: 39579, End: 79521, Length: 39943

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014210:56836165683616570702223407Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,01013BLASTN svgBLASTP svg
NC_014210:38179483817948384029722350Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,0759BLASTN svgBLASTP svg
NC_013510:54994475499447554883349387Thermomonospora curvata DSM 43183, complete genome7e-144519BLASTN svgBLASTP svg
NC_009142:267550*26755029023122682Saccharopolyspora erythraea NRRL 2338, complete genome6e-58234BLASTN svgBLASTP svg
NC_014815:2639339*2639339265728817950Micromonospora sp. L5 chromosome, complete genome3e-50208BLASTN svgBLASTP svg
NC_007777:49543064954306497563821333Frankia sp. CcI3, complete genome1e-37167BLASTN svgBLASTP svg
NC_010572:45054284505428452522719800Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-36163BLASTN svgBLASTP svg
NC_015671:31533253153325317759924275Cellvibrio gilvus ATCC 13127 chromosome, complete genome7e-36161BLASTN svgBLASTP svg
NC_008278:66702366702369009923077Frankia alni ACN14a, complete genome6e-30141BLASTN svgBLASTP svg
NC_013729:380312*38031240421723906Kribbella flavida DSM 17836, complete genome6e-27131BLASTN svgBLASTP svg
NC_014039:26112626112628731726192Propionibacterium acnes SK137 chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_006085:23412723412725583521709Propionibacterium acnes KPA171202, complete genome2e-20109BLASTN svgBLASTP svg
NC_021064:31816318165424922434Propionibacterium avidum 44067, complete genome9e-20107BLASTN svgBLASTP svg
NC_010572:3925803*3925803395628730485Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_009142:67295126729512675813128620Saccharopolyspora erythraea NRRL 2338, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_014158:14793131479313150261123299Tsukamurella paurometabola DSM 20162 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_014210:54093245409324543142122098Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,5e-1281.8BLASTN svgBLASTP svg
NC_006085:12345871234587126026325677Propionibacterium acnes KPA171202, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_015953:3860467*3860467388114620680Streptomyces sp. SirexAA-E chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_014168:14113101411310143315721848Segniliparus rotundus DSM 44985 chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_014039:12385001238500126344824949Propionibacterium acnes SK137 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007333:430000*43000045449524496Thermobifida fusca YX, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_013714:2350749*2350749237219321445Bifidobacterium dentium Bd1, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_014831:65408*654088880223395Thermaerobacter marianensis DSM 12885 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012559:76893976893979733928401Laribacter hongkongensis HLHK9, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014168:86974686974691121841473Segniliparus rotundus DSM 44985 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_013093:1909305*1909305193716827864Actinosynnema mirum DSM 43827, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_006177:12383*123833284720465Symbiobacterium thermophilum IAM 14863, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014623:79632387963238798828025043Stigmatella aurantiaca DW4/3-1 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg