Query: NC_007333:39579 Thermobifida fusca YX, complete genome
Start: 39579, End: 79521, Length: 39943
Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_014210:5683616 | 5683616 | 5707022 | 23407 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome, | 0 | 1013 | BLASTN svg | BLASTP svg |
NC_014210:3817948 | 3817948 | 3840297 | 22350 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome, | 0 | 759 | BLASTN svg | BLASTP svg |
NC_013510:5499447 | 5499447 | 5548833 | 49387 | Thermomonospora curvata DSM 43183, complete genome | 7e-144 | 519 | BLASTN svg | BLASTP svg |
NC_009142:267550* | 267550 | 290231 | 22682 | Saccharopolyspora erythraea NRRL 2338, complete genome | 6e-58 | 234 | BLASTN svg | BLASTP svg |
NC_014815:2639339* | 2639339 | 2657288 | 17950 | Micromonospora sp. L5 chromosome, complete genome | 3e-50 | 208 | BLASTN svg | BLASTP svg |
NC_007777:4954306 | 4954306 | 4975638 | 21333 | Frankia sp. CcI3, complete genome | 1e-37 | 167 | BLASTN svg | BLASTP svg |
NC_010572:4505428 | 4505428 | 4525227 | 19800 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 2e-36 | 163 | BLASTN svg | BLASTP svg |
NC_015671:3153325 | 3153325 | 3177599 | 24275 | Cellvibrio gilvus ATCC 13127 chromosome, complete genome | 7e-36 | 161 | BLASTN svg | BLASTP svg |
NC_008278:667023 | 667023 | 690099 | 23077 | Frankia alni ACN14a, complete genome | 6e-30 | 141 | BLASTN svg | BLASTP svg |
NC_013729:380312* | 380312 | 404217 | 23906 | Kribbella flavida DSM 17836, complete genome | 6e-27 | 131 | BLASTN svg | BLASTP svg |
NC_014039:261126 | 261126 | 287317 | 26192 | Propionibacterium acnes SK137 chromosome, complete genome | 2e-20 | 109 | BLASTN svg | BLASTP svg |
NC_006085:234127 | 234127 | 255835 | 21709 | Propionibacterium acnes KPA171202, complete genome | 2e-20 | 109 | BLASTN svg | BLASTP svg |
NC_021064:31816 | 31816 | 54249 | 22434 | Propionibacterium avidum 44067, complete genome | 9e-20 | 107 | BLASTN svg | BLASTP svg |
NC_010572:3925803* | 3925803 | 3956287 | 30485 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_009142:6729512 | 6729512 | 6758131 | 28620 | Saccharopolyspora erythraea NRRL 2338, complete genome | 8e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_014158:1479313 | 1479313 | 1502611 | 23299 | Tsukamurella paurometabola DSM 20162 chromosome, complete genome | 1e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_014210:5409324 | 5409324 | 5431421 | 22098 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome, | 5e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_006085:1234587 | 1234587 | 1260263 | 25677 | Propionibacterium acnes KPA171202, complete genome | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_015953:3860467* | 3860467 | 3881146 | 20680 | Streptomyces sp. SirexAA-E chromosome, complete genome | 3e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_014168:1411310 | 1411310 | 1433157 | 21848 | Segniliparus rotundus DSM 44985 chromosome, complete genome | 3e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_014039:1238500 | 1238500 | 1263448 | 24949 | Propionibacterium acnes SK137 chromosome, complete genome | 1e-09 | 73.8 | BLASTN svg | BLASTP svg |
NC_007333:430000* | 430000 | 454495 | 24496 | Thermobifida fusca YX, complete genome | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_013714:2350749* | 2350749 | 2372193 | 21445 | Bifidobacterium dentium Bd1, complete genome | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_014831:65408* | 65408 | 88802 | 23395 | Thermaerobacter marianensis DSM 12885 chromosome, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_012559:768939 | 768939 | 797339 | 28401 | Laribacter hongkongensis HLHK9, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_014168:869746 | 869746 | 911218 | 41473 | Segniliparus rotundus DSM 44985 chromosome, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013093:1909305* | 1909305 | 1937168 | 27864 | Actinosynnema mirum DSM 43827, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_006177:12383* | 12383 | 32847 | 20465 | Symbiobacterium thermophilum IAM 14863, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_014623:7963238 | 7963238 | 7988280 | 25043 | Stigmatella aurantiaca DW4/3-1 chromosome, complete genome | 5e-06 | 61.9 | BLASTN svg | BLASTP svg |