Pre_GI: BLASTN Hits

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Query: NC_005126:1265071 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1265071, End: 1318800, Length: 53730

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome014030BLASTN svgBLASTP svg
NC_005126:58900058900061853029531Photorhabdus luminescens subsp. laumondii TTO1, complete genome010400BLASTN svgBLASTP svg
NC_005126:13154741315474135150136028Photorhabdus luminescens subsp. laumondii TTO1, complete genome010390BLASTN svgBLASTP svg
NC_005126:42105004210500424678336284Photorhabdus luminescens subsp. laumondii TTO1, complete genome07957BLASTN svgBLASTP svg
NC_012962:3864000*3864000389221428215Photorhabdus asymbiotica, complete genome05949BLASTN svgBLASTP svg
NC_005126:16138181613818165143837621Photorhabdus luminescens subsp. laumondii TTO1, complete genome04734BLASTN svgBLASTP svg
NC_005126:12230421223042125359930558Photorhabdus luminescens subsp. laumondii TTO1, complete genome02968BLASTN svgBLASTP svg
NC_005126:34965834965840029550638Photorhabdus luminescens subsp. laumondii TTO1, complete genome02962BLASTN svgBLASTP svg
NC_005126:49196894919689494365923971Photorhabdus luminescens subsp. laumondii TTO1, complete genome02962BLASTN svgBLASTP svg
NC_014228:1712339*1712339175523642898Xenorhabdus nematophila ATCC 19061, complete genome02912BLASTN svgBLASTP svg
NC_004851:15767515767518009922425Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence0902BLASTN svgBLASTP svg
NC_014228:4360676*4360676438499224317Xenorhabdus nematophila ATCC 19061, complete genome0682BLASTN svgBLASTP svg
NC_014228:28835002883500292066537166Xenorhabdus nematophila ATCC 19061, complete genome4e-149537BLASTN svgBLASTP svg
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome5e-127464BLASTN svgBLASTP svg
NC_012912:21741832174183220033726155Dickeya zeae Ech1591, complete genome2e-114422BLASTN svgBLASTP svg
NC_005126:36304593630459368847858020Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-89339BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-89339BLASTN svgBLASTP svg
NC_005126:48575004857500488024422745Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-89339BLASTN svgBLASTP svg
NC_012214:1267589*1267589129886031272Erwinia pyrifoliae Ep1/96, complete genome1e-78303BLASTN svgBLASTP svg
NC_007385:15751615751617664619131Shigella sonnei Ss046 plasmid pSS_046, complete sequence6e-74287BLASTN svgBLASTP svg
NC_007607:870008700012362836629Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence1e-71280BLASTN svgBLASTP svg
NC_005126:34853303485330350809922770Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-65258BLASTN svgBLASTP svg
NC_005126:31217223121722318069058969Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-64256BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome3e-60242BLASTN svgBLASTP svg
NC_012962:48489948489951520630308Photorhabdus asymbiotica, complete genome5e-56228BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome1e-37167BLASTN svgBLASTP svg
NC_012962:35680463568046362047652431Photorhabdus asymbiotica, complete genome6e-37165BLASTN svgBLASTP svg
NC_004547:38176563817656384109623441Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-36163BLASTN svgBLASTP svg
NC_005126:4824500*4824500485430329804Photorhabdus luminescens subsp. laumondii TTO1, complete genome9e-33151BLASTN svgBLASTP svg
NC_013421:385930*38593040496119032Pectobacterium wasabiae WPP163, complete genome1e-31147BLASTN svgBLASTP svg
NC_008563:31192843119284314330124018Escherichia coli APEC O1, complete genome5e-31145BLASTN svgBLASTP svg
NC_005126:14250014250016059218093Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-30143BLASTN svgBLASTP svg
NC_012962:34636443463644349841134768Photorhabdus asymbiotica, complete genome5e-28135BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome5e-28135BLASTN svgBLASTP svg
NC_014228:33538963353896338544531550Xenorhabdus nematophila ATCC 19061, complete genome1e-25127BLASTN svgBLASTP svg
NC_012912:22857782285778231059124814Dickeya zeae Ech1591, complete genome5e-22115BLASTN svgBLASTP svg
NC_014228:1929665*1929665198074651082Xenorhabdus nematophila ATCC 19061, complete genome2e-21113BLASTN svgBLASTP svg
NC_012962:25877562587756263945151696Photorhabdus asymbiotica, complete genome8e-21111BLASTN svgBLASTP svg
NC_011059:670345*67034569409923755Prosthecochloris aestuarii DSM 271, complete genome5e-19105BLASTN svgBLASTP svg
NC_019697:18797691879769190261722849Chamaesiphon minutus PCC 6605, complete genome2e-18103BLASTN svgBLASTP svg
NC_014228:35053203505320352873223413Xenorhabdus nematophila ATCC 19061, complete genome2e-18103BLASTN svgBLASTP svg
NC_013722:850307*85030787951329207Xanthomonas albilineans, complete genome7e-1591.7BLASTN svgBLASTP svg
NC_013722:1816561*1816561186559949039Xanthomonas albilineans, complete genome7e-1591.7BLASTN svgBLASTP svg
NC_013722:1785692*1785692183919253501Xanthomonas albilineans, complete genome7e-1591.7BLASTN svgBLASTP svg
NC_014722:1467996*1467996149010322108Burkholderia rhizoxinica HKI 454, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_014718:440960*44096046077219813Burkholderia rhizoxinica HKI 454 chromosome, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_004463:22624672262467231174249276Bradyrhizobium japonicum USDA 110, complete genome7e-1281.8BLASTN svgBLASTP svg
NC_014718:630188*63018865954429357Burkholderia rhizoxinica HKI 454 chromosome, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_013421:2613137*2613137263682223686Pectobacterium wasabiae WPP163, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_012797:112632326323Desulfovibrio magneticus RS-1 plasmid pDMC1, complete sequence3e-0869.9BLASTN svgBLASTP svg
NC_007005:44113884411388444643035043Pseudomonas syringae pv. syringae B728a, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_014722:1971305*1971305199935928055Burkholderia rhizoxinica HKI 454, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_014972:19823151982315200871426400Desulfobulbus propionicus DSM 2032 chromosome, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_013716:31097003109700314990540206Citrobacter rodentium ICC168, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_010465:17907391790739181268021942Yersinia pseudotuberculosis YPIII, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_013961:2579000*2579000261224833249Erwinia amylovora, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_015951:46000460007890132902Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete6e-0661.9BLASTN svgBLASTP svg
NC_020410:18563761856376187736720992Bacillus amyloliquefaciens subsp. plantarum UCMB5036 complete6e-0661.9BLASTN svgBLASTP svg
NC_019842:19198661919866194042120556Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,6e-0661.9BLASTN svgBLASTP svg
NC_004547:1683593*1683593172730343711Erwinia carotovora subsp. atroseptica SCRI1043, complete genome6e-0661.9BLASTN svgBLASTP svg