Query: NC_004603:370320 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete
Start: 370320, End: 395892, Length: 25573
Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria
General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_004459:2025436 | 2025436 | 2055246 | 29811 | Vibrio vulnificus CMCP6 chromosome I, complete sequence | 0 | 3971 | BLASTN svg | BLASTP svg |
NC_015633:2801321 | 2801321 | 2825466 | 24146 | Vibrio anguillarum 775 chromosome chromosome I, complete sequence | 0 | 2042 | BLASTN svg | BLASTP svg |
NC_014306:4376012 | 4376012 | 4417847 | 41836 | Erwinia billingiae Eb661, complete genome | 4e-67 | 264 | BLASTN svg | BLASTP svg |
NC_010468:4059436 | 4059436 | 4082356 | 22921 | Escherichia coli ATCC 8739, complete genome | 9e-53 | 216 | BLASTN svg | BLASTP svg |
NC_002947:5386489 | 5386489 | 5414167 | 27679 | Pseudomonas putida KT2440, complete genome | 6e-29 | 137 | BLASTN svg | BLASTP svg |
NC_002506:370629 | 370629 | 439828 | 69200 | Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete | 6e-26 | 127 | BLASTN svg | BLASTP svg |
NC_013282:116649* | 116649 | 139558 | 22910 | Cronobacter turicensis, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_014394:3114648* | 3114648 | 3134041 | 19394 | Gallionella capsiferriformans ES-2 chromosome, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
AP010958:4707712* | 4707712 | 4725980 | 18269 | Escherichia coli O103:H2 str. 12009 DNA, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
CP002185:3964500 | 3964500 | 3986138 | 21639 | Escherichia coli W, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
CP002516:119935* | 119935 | 146948 | 27014 | Escherichia coli KO11, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
CU928145:4131924 | 4131924 | 4155038 | 23115 | Escherichia coli 55989 chromosome, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_009801:4073968 | 4073968 | 4096174 | 22207 | Escherichia coli E24377A, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_010468:111504* | 111504 | 138149 | 26646 | Escherichia coli ATCC 8739, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_011748:4131924 | 4131924 | 4155038 | 23115 | Escherichia coli 55989, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_010995:764567* | 764567 | 789911 | 25345 | Cellvibrio japonicus Ueda107, complete genome | 9e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_010498:3988351* | 3988351 | 4018468 | 30118 | Escherichia coli SMS-3-5, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_009800:3787320* | 3787320 | 3809852 | 22533 | Escherichia coli HS, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_015224:4473230* | 4473230 | 4497145 | 23916 | Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome, | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_004337:3590323* | 3590323 | 3952993 | 362671 | Shigella flexneri 2a str. 301, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010170:4196197* | 4196197 | 4225724 | 29528 | Bordetella petrii, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_010498:4899167 | 4899167 | 4922745 | 23579 | Escherichia coli SMS-3-5, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_013416:1748848* | 1748848 | 1766918 | 18071 | Aggregatibacter actinomycetemcomitans D11S-1, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_009943:940835 | 940835 | 965631 | 24797 | Candidatus Desulfococcus oleovorans Hxd3, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_004431:5123325 | 5123325 | 5149090 | 25766 | Escherichia coli CFT073, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_002505:514732* | 514732 | 552284 | 37553 | Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_009092:1127000 | 1127000 | 1151482 | 24483 | Shewanella loihica PV-4, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_009831:1255995* | 1255995 | 1278955 | 22961 | Shewanella sediminis HAW-EB3, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |