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Query: NC_004603:370320 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 370320, End: 395892, Length: 25573

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004459:20254362025436205524629811Vibrio vulnificus CMCP6 chromosome I, complete sequence03971BLASTN svgBLASTP svg
NC_015633:28013212801321282546624146Vibrio anguillarum 775 chromosome chromosome I, complete sequence02042BLASTN svgBLASTP svg
NC_014306:43760124376012441784741836Erwinia billingiae Eb661, complete genome4e-67264BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome9e-53216BLASTN svgBLASTP svg
NC_002947:53864895386489541416727679Pseudomonas putida KT2440, complete genome6e-29137BLASTN svgBLASTP svg
NC_002506:37062937062943982869200Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete6e-26127BLASTN svgBLASTP svg
NC_013282:116649*11664913955822910Cronobacter turicensis, complete genome1e-20109BLASTN svgBLASTP svg
NC_014394:3114648*3114648313404119394Gallionella capsiferriformans ES-2 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
AP010958:4707712*4707712472598018269Escherichia coli O103:H2 str. 12009 DNA, complete genome5e-1797.6BLASTN svgBLASTP svg
CP002185:39645003964500398613821639Escherichia coli W, complete genome5e-1797.6BLASTN svgBLASTP svg
CP002516:119935*11993514694827014Escherichia coli KO11, complete genome5e-1797.6BLASTN svgBLASTP svg
CU928145:41319244131924415503823115Escherichia coli 55989 chromosome, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_009801:40739684073968409617422207Escherichia coli E24377A, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_010468:111504*11150413814926646Escherichia coli ATCC 8739, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_011748:41319244131924415503823115Escherichia coli 55989, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_010995:764567*76456778991125345Cellvibrio japonicus Ueda107, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_010498:3988351*3988351401846830118Escherichia coli SMS-3-5, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009800:3787320*3787320380985222533Escherichia coli HS, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015224:4473230*4473230449714523916Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,8e-1383.8BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010170:4196197*4196197422572429528Bordetella petrii, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010498:48991674899167492274523579Escherichia coli SMS-3-5, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_013416:1748848*1748848176691818071Aggregatibacter actinomycetemcomitans D11S-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009943:94083594083596563124797Candidatus Desulfococcus oleovorans Hxd3, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004431:51233255123325514909025766Escherichia coli CFT073, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002505:514732*51473255228437553Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete2e-0765.9BLASTN svgBLASTP svg
NC_009092:11270001127000115148224483Shewanella loihica PV-4, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009831:1255995*1255995127895522961Shewanella sediminis HAW-EB3, complete genome3e-0661.9BLASTN svgBLASTP svg