Pre_GI: BLASTN Hits

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Query: NC_004129:5204500 Pseudomonas fluorescens Pf-5, complete genome

Start: 5204500, End: 5225815, Length: 21316

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_005773:4028500*4028500405209923600Pseudomonas syringae pv. phaseolicola 1448A, complete genome01992BLASTN svgBLASTP svg
NC_021150:3505234*3505234352968724454Azotobacter vinelandii CA6, complete genome0999BLASTN svgBLASTP svg
NC_012560:3505235*3505235352968824454Azotobacter vinelandii DJ, complete genome0999BLASTN svgBLASTP svg
NC_014733:2201485*2201485222586124377Methylovorus sp. MP688 chromosome, complete genome6e-75289BLASTN svgBLASTP svg
NC_010551:1462827*1462827148416621340Burkholderia ambifaria MC40-6 chromosome 1, complete sequence1e-54222BLASTN svgBLASTP svg
NC_007947:577315*57731559793020616Methylobacillus flagellatus KT, complete genome1e-51212BLASTN svgBLASTP svg
NC_007298:2689731*2689731272716337433Dechloromonas aromatica RCB, complete genome2e-47198BLASTN svgBLASTP svg
NC_014931:3886405*3886405390909922695Variovorax paradoxus EPS chromosome, complete genome1e-35159BLASTN svgBLASTP svg
NC_007347:1215358*1215358123935023993Ralstonia eutropha JMP134 chromosome 1, complete sequence2e-31145BLASTN svgBLASTP svg
NC_012559:76893976893979733928401Laribacter hongkongensis HLHK9, complete genome2e-25125BLASTN svgBLASTP svg
NC_015138:3160764*3160764318411723354Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete8e-25123BLASTN svgBLASTP svg
NC_010694:2971170*2971170300344632277Erwinia tasmaniensis, complete genome3e-24121BLASTN svgBLASTP svg
NC_008782:2062962*2062962208700324042Acidovorax sp. JS42, complete genome1e-23119BLASTN svgBLASTP svg
NC_015711:4067905*4067905410659938695Myxococcus fulvus HW-1 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_008095:7172047*7172047719953227486Myxococcus xanthus DK 1622, complete genome8e-22113BLASTN svgBLASTP svg
NC_012880:1127997*1127997115596427968Dickeya dadantii Ech703, complete genome3e-21111BLASTN svgBLASTP svg
NC_013592:3618248*3618248363709918852Dickeya dadantii Ech586, complete genome2e-19105BLASTN svgBLASTP svg
NC_003063:757999*75799978308325085Agrobacterium tumefaciens str. C58 chromosome linear, complete5e-1797.6BLASTN svgBLASTP svg
NC_009952:1680682*1680682171856437883Dinoroseobacter shibae DFL 12, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_020064:27798642779864280221322350Serratia marcescens FGI94, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015259:2757081*2757081278813031050Polymorphum gilvum SL003B-26A1 chromosome, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_011770:18118741811874183622424351Pseudomonas aeruginosa LESB58, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008463:17564341756434177764821215Pseudomonas aeruginosa UCBPP-PA14, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_012590:19389519389521817724283Corynebacterium aurimucosum ATCC 700975, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009943:1499111*1499111152068621576Candidatus Desulfococcus oleovorans Hxd3, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010120:19994219994222285022909Neisseria meningitidis 053442, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010337:524605*52460554468120077Heliobacterium modesticaldum Ice1, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_011894:792827928211536336082Methylobacterium nodulans ORS 2060, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_011985:3282924*3282924330901226089Agrobacterium radiobacter K84 chromosome 1, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_006570:1526071*1526071154588919819Francisella tularensis subsp. tularensis Schu 4, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007880:290059*29005931361823560Francisella tularensis subsp. holarctica, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008245:1525877*1525877155460728731Francisella tularensis subsp. tularensis FSC 198, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008369:291640*29164031483523196Francisella tularensis subsp. holarctica OSU18, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008601:1560482*1560482160300942528Francisella tularensis subsp. novicida U112, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009749:289695*28969530981820124Francisella tularensis subsp. holarctica FTA, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010677:456277*45627747729321017Francisella tularensis subsp. mediasiatica FSC147, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015460:1687684*1687684170876521082Gallibacterium anatis UMN179 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_007677:1911109*1911109193131320205Salinibacter ruber DSM 13855, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014958:3207431*3207431323030022870Deinococcus maricopensis DSM 21211 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007802:3575739*3575739362449148753Jannaschia sp. CCS1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015850:73668073668075815321474Acidithiobacillus caldus SM-1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007963:31137393113739313569421956Chromohalobacter salexigens DSM 3043, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003911:3864852*3864852389829633445Silicibacter pomeroyi DSS-3, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015499:1403447*1403447142823724791Thermodesulfobium narugense DSM 14796 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014210:3671495*3671495369312021626Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,4e-0867.9BLASTN svgBLASTP svg
NC_008767:20101402010140202919319054Neisseria meningitidis FAM18, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014006:3124818*3124818317034545528Sphingobium japonicum UT26S chromosome 1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014623:47887684788768481298824221Stigmatella aurantiaca DW4/3-1 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015222:1905194*1905194192907923886Nitrosomonas sp. AL212 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008752:3955327*3955327397626320937Acidovorax avenae subsp. citrulli AAC00-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006177:2943259*2943259296594222684Symbiobacterium thermophilum IAM 14863, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004344:25747125747127832220852Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,3e-0661.9BLASTN svgBLASTP svg
NC_000913:3176000*3176000319898722988Escherichia coli K12, complete genome3e-0661.9BLASTN svgBLASTP svg
CU928160:32632483263248328331520068Escherichia coli IAI1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
CU928145:35299303529930355057820649Escherichia coli 55989 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
CP002516:69370369370371389120189Escherichia coli KO11, complete genome3e-0661.9BLASTN svgBLASTP svg
CP002185:3393813*3393813341586022048Escherichia coli W, complete genome3e-0661.9BLASTN svgBLASTP svg
AP010958:37879913787991381070122711Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-0661.9BLASTN svgBLASTP svg
AC_000091:31802753180275319962119347Escherichia coli W3110 DNA, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009138:1843998*1843998189681452817Herminiimonas arsenicoxydans, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009800:3224575*3224575324521620642Escherichia coli HS, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020304:256000*25600027839122392Desulfocapsa sulfexigens DSM 10523, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015677:3520524*3520524354474924226Ramlibacter tataouinensis TTB310 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013446:4281250*4281250430762526376Comamonas testosteroni CNB-2, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011992:889985*88998591136221378Acidovorax ebreus TPSY, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011750:36837603683760370613422375Escherichia coli IAI39 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011748:35299303529930355057820649Escherichia coli 55989, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010524:824145*82414584860224458Leptothrix cholodnii SP-6, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010473:3273882*3273882329673222851Escherichia coli str. K-12 substr. DH10B, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010468:69494369494371914224200Escherichia coli ATCC 8739, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009801:35114443511444352932517882Escherichia coli E24377A, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010655:1606901*1606901165451347613Akkermansia muciniphila ATCC BAA-835, complete genome1e-0560BLASTN svgBLASTP svg
NC_010688:28501642850164287100220839Xanthomonas campestris pv. campestris, complete genome1e-0560BLASTN svgBLASTP svg
NC_012796:3267569*3267569331498647418Desulfovibrio magneticus RS-1, complete genome1e-0560BLASTN svgBLASTP svg
NC_014774:171500*17150020917537676Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete1e-0560BLASTN svgBLASTP svg
NC_015663:43471874347187437073923553Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_015947:19373411937341196618728847Burkholderia sp. JV3 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_004129:195347*19534722067225326Pseudomonas fluorescens Pf-5, complete genome1e-0560BLASTN svgBLASTP svg