Pre_GI Gene

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Host: NC_011985 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011985:3282924 Agrobacterium radiobacter K84 chromosome 1, complete genome

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain has been developed for worldwide commercial use to control crown gall. This species is used commercially to control crown gall, a tumorogenic plant disease caused by the ubiquitous soil-borne pathogen Agrobacterium tumefaciens, which affects susceptible woody plants worldwide. The pathogen is responsible for nursery and orchard losses among stone fruit trees, grapes, apples, pears, nut trees, caneberries, clematis, hops, kiwifruit, persimmons, roses and many ornamental annuals, trees and shrubs. Infected plants are usually weakened and unproductive due to their damaged root system.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
328292432847381815chromosome partition proteinQuickGO ontologyBLASTP
32848833285635753TatD-related deoxyribonucleaseQuickGO ontologyBLASTP
328564232869071266hypothetical proteinBLASTP
32869883287866879hypothetical proteinBLASTP
32882013288755555insertion sequence transposase proteinQuickGO ontologyBLASTP
3289051328912474tRNA-MetQuickGO ontology
328926832893861195S ribosomal RNA operon 3QuickGO ontologyBLASTP
32895193292140262223S ribosomal RNA operon 3QuickGO ontologyBLASTP
32925453292682138hypothetical protein
3292866329293873tRNA-AlaQuickGO ontologyBLASTP
3293068329314174tRNA-IleQuickGO ontology
32934223294930150916S ribosomal RNA operon 3QuickGO ontologyBLASTP
329573332976821950peptidase proteinQuickGO ontologyBLASTP
32977223298231510hypothetical proteinBLASTP
329837933009792601ATP-dependent Clp proteaseQuickGO ontologyBLASTP
33012273301931705hypothetical proteinBLASTP
33022783303153876protoporphyrinogen oxidase methyltransferase proteinQuickGO ontologyBLASTP
330315033042291080peptide chain release factor 1QuickGO ontologyBLASTP
330426133065282268enzyme I of the phosphotransferase systemQuickGO ontologyBLASTP
330663133079051275aspartate kinase proteinQuickGO ontologyBLASTP
330826633090127473-demethylubiquinone-9 3-methyltransferase proteinQuickGO ontologyBLASTP