Pre_GI: BLASTN Hits

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Query: NC_004129:4993974 Pseudomonas fluorescens Pf-5, complete genome

Start: 4993974, End: 5020723, Length: 26750

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012660:1804610*1804610183512430515Pseudomonas fluorescens SBW25 chromosome, complete genome06930BLASTN svgBLASTP svg
NC_020209:997385*997385104138844004Pseudomonas poae RE*1-1-14, complete genome05751BLASTN svgBLASTP svg
NC_015379:1887275*1887275191854531271Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,03620BLASTN svgBLASTP svg
NC_008027:1559083*1559083158236923287Pseudomonas entomophila L48, complete genome01949BLASTN svgBLASTP svg
NC_015733:1555476*1555476160259947124Pseudomonas putida S16 chromosome, complete genome01697BLASTN svgBLASTP svg
NC_015410:2144387*2144387217909934713Pseudomonas mendocina NK-01 chromosome, complete genome01582BLASTN svgBLASTP svg
NC_009439:2038303*2038303206823929937Pseudomonas mendocina ymp, complete genome01540BLASTN svgBLASTP svg
NC_008463:2017607*2017607204360726001Pseudomonas aeruginosa UCBPP-PA14, complete genome01439BLASTN svgBLASTP svg
NC_011770:2046490*2046490207050324014Pseudomonas aeruginosa LESB58, complete genome01415BLASTN svgBLASTP svg
NC_015379:60239266023926604728023355Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,0856BLASTN svgBLASTP svg
NC_018868:569423*56942361904449622Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome5e-150539BLASTN svgBLASTP svg
NC_012997:1446037*1446037147363527599Teredinibacter turnerae T7901, complete genome5e-122446BLASTN svgBLASTP svg
NC_007298:13348761334876136112026245Dechloromonas aromatica RCB, complete genome5e-82313BLASTN svgBLASTP svg
NC_008390:987052987052101116924118Burkholderia cepacia AMMD chromosome 1, complete sequence1e-76295BLASTN svgBLASTP svg
NC_007492:45639814563981458949625516Pseudomonas fluorescens PfO-1, complete genome1e-70276BLASTN svgBLASTP svg
NC_007404:974461974461101843943979Thiobacillus denitrificans ATCC 25259, complete genome2e-69272BLASTN svgBLASTP svg
NC_010524:1005355*1005355103237727023Leptothrix cholodnii SP-6, complete genome7e-69270BLASTN svgBLASTP svg
NC_020064:521500*52150055828736788Serratia marcescens FGI94, complete genome9e-56226BLASTN svgBLASTP svg
NC_008782:2568027*2568027262351455488Acidovorax sp. JS42, complete genome4e-55224BLASTN svgBLASTP svg
NC_015422:20786182078618211032231705Alicycliphilus denitrificans K601 chromosome, complete genome2e-53218BLASTN svgBLASTP svg
NC_014910:19125521912552193924626695Alicycliphilus denitrificans BC chromosome, complete genome2e-53218BLASTN svgBLASTP svg
NC_010804:996837996837104668249846Burkholderia multivorans ATCC 17616 chromosome 1, complete9e-53216BLASTN svgBLASTP svg
NC_009654:3215205*3215205324567930475Marinomonas sp. MWYL1, complete genome5e-45190BLASTN svgBLASTP svg
NC_008825:25649652564965258966024696Methylibium petroleiphilum PM1, complete genome5e-45190BLASTN svgBLASTP svg
NC_002927:37168943716894377039253499Bordetella bronchiseptica RB50, complete genome4e-30141BLASTN svgBLASTP svg
NC_009901:24859652485965250609920135Shewanella pealeana ATCC 700345, complete genome7e-29137BLASTN svgBLASTP svg
NC_008702:1153344*1153344117844425101Azoarcus sp. BH72, complete genome7e-29137BLASTN svgBLASTP svg
NC_002516:35190003519000354507426075Pseudomonas aeruginosa PAO1, complete genome1e-24123BLASTN svgBLASTP svg
NC_008781:2925818*2925818294540419587Polaromonas naphthalenivorans CJ2, complete genome4e-24121BLASTN svgBLASTP svg
NC_015740:25873232587323260752820206Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-21113BLASTN svgBLASTP svg
NC_007498:3655304*3655304367749922196Pelobacter carbinolicus DSM 2380, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_011886:4376261*4376261440799931739Arthrobacter chlorophenolicus A6, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_015458:24414352441435246619024756Pusillimonas sp. T7-7 chromosome, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_013204:3613824*3613824364749933676Eggerthella lenta DSM 2243, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012559:14975481497548152859931052Laribacter hongkongensis HLHK9, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010939:32149232149234388122390Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete2e-1695.6BLASTN svgBLASTP svg
NC_009053:31377931377933687823100Actinobacillus pleuropneumoniae L20, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010556:6612*66122825221641Exiguobacterium sibiricum 255-15, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_014844:35826773582677360568023004Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_007651:3719191*3719191374181722627Burkholderia thailandensis E264 chromosome I, complete sequence4e-1591.7BLASTN svgBLASTP svg
NC_013165:3146000*3146000318049934500Slackia heliotrinireducens DSM 20476, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008578:2431074*2431074245799926926Acidothermus cellulolyticus 11B, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011757:97281*9728112674229462Methylobacterium chloromethanicum CM4, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012808:58701*587018490626206Methylobacterium extorquens AM1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013521:4240468*4240468426799927532Sanguibacter keddieii DSM 10542, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014151:4106624*4106624413399927376Cellulomonas flavigena DSM 20109 chromosome, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_010545:11950*119506085348904Corynebacterium urealyticum DSM 7109, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_008541:4679022*4679022470999930978Arthrobacter sp. FB24 chromosome 1, complete sequence9e-1383.8BLASTN svgBLASTP svg
NC_002939:2844240*2844240287693932700Geobacter sulfurreducens PCA, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_018720:2138180*2138180217949941320Bifidobacterium asteroides PRL2011 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008782:31674403167440322216554726Acidovorax sp. JS42, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014098:3372000*3372000339499923000Bacillus tusciae DSM 2912 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014550:3839389*3839389387099931611Arthrobacter arilaitensis Re117, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014550:7560*75603657129012Arthrobacter arilaitensis Re117, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015145:4232283*4232283426249930217Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_007510:28051212805121282621621096Burkholderia sp. 383 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_004347:33039573303957332545721501Shewanella oneidensis MR-1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_002946:618439*61843964067022232Neisseria gonorrhoeae FA 1090, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003116:1488576*1488576150859920024Neisseria meningitidis Z2491, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009077:48103794810379483961029232Mycobacterium sp. JLS, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011886:1891077*1891077192459933523Arthrobacter chlorophenolicus A6, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015067:2371428*2371428239399922572Bifidobacterium longum subsp. longum JCM 1217, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015696:79800079800082319525196Francisella sp. TX077308 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006087:111092810928Leifsonia xyli subsp. xyli str. CTCB07, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007333:111820218202Thermobifida fusca YX, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007333:3626510*3626510365399927490Thermobifida fusca YX, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007512:2024880*2024880207013145252Pelodictyon luteolum DSM 273, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009663:16568041656804167976622963Sulfurovum sp. NBC37-1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_011894:200928*20092822402523098Methylobacterium nodulans ORS 2060, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_018665:1*12938529385Exiguobacterium antarcticum B7 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010681:13256321325632135109925468Burkholderia phytofirmans PsJN chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_011979:4293859*4293859431999926141Geobacter sp. FRC-32, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012779:2755338*2755338278000524668Edwardsiella ictaluri 93-146, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013170:1*11459914599Cryptobacterium curtum DSM 15641, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013510:1*11865618656Thermomonospora curvata DSM 43183, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014926:1108811*1108811113361124801Thermovibrio ammonificans HB-1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015564:4727630*4727630475399926370Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012803:3691*36914264438954Micrococcus luteus NCTC 2665, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010002:65900816590081661609926019Delftia acidovorans SPH-1, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009654:89449289449291290618415Marinomonas sp. MWYL1, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013730:58840588408228023441Spirosoma linguale DSM 74, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015222:1047944*1047944107609928156Nitrosomonas sp. AL212 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015312:1*12465124651Pseudonocardia dioxanivorans CB1190 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015424:3112637*3112637318003367397Aeromonas veronii B565 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015731:2950874*2950874299427243399Nitrosomonas sp. Is79A3 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011146:3720658*3720658375266832011Geobacter bemidjiensis Bem, complete genome3e-0661.9BLASTN svgBLASTP svg