Pre_GI: BLASTN Hits

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Query: NC_003366:1427785 Clostridium perfringens str. 13, complete genome

Start: 1427785, End: 1450275, Length: 22491

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010674:2856997*2856997287924822252Clostridium botulinum B str. Eklund 17B, complete genome01154BLASTN svgBLASTP svg
NC_008593:18598611859861188348723627Clostridium novyi NT, complete genome2e-179636BLASTN svgBLASTP svg
NC_012781:19688271968827200279833972Eubacterium rectale ATCC 33656, complete genome8e-62246BLASTN svgBLASTP svg
NC_004663:16315216315218293619785Bacteroides thetaiotaomicron VPI-5482, complete genome4e-33151BLASTN svgBLASTP svg
NC_014972:19230351923035194350220468Desulfobulbus propionicus DSM 2032 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_008593:22508712250871226893418064Clostridium novyi NT, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_008262:784878*78487882991045033Clostridium perfringens SM101, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_004557:749330*74933077009920770Clostridium tetani E88, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_021182:12456921245692126370418013Clostridium pasteurianum BC1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008261:81729581729584209724803Clostridium perfringens ATCC 13124, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003366:863437*86343788249419058Clostridium perfringens str. 13, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011898:351792*35179237417622385Clostridium cellulolyticum H10, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010337:1188373*1188373121235323981Heliobacterium modesticaldum Ice1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015687:15086641508664153215523492Clostridium acetobutylicum DSM 1731 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003030:15100001510000154543435435Clostridium acetobutylicum ATCC 824, complete genome7e-0763.9BLASTN svgBLASTP svg