Pre_GI: BLASTP Hits

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Query: NC_017328:2586171:2586171 Shigella flexneri 2002017 chromosome, complete genome

Start: 2586171, End: 2586794, Length: 624

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:2548288:254828825482882549157870Shigella flexneri 2a str. 301, complete genomeN-acetylmuramoyl-l-alanine amidase I1e-109395
NC_004741:2526421:252642125264212527290870Shigella flexneri 2a str. 2457T, complete genomeN-acetylmuramoyl-l-alanine amidase I1e-109395
NC_007613:2699500:2710491271049127118341344Shigella boydii Sb227, complete genomeputative amidase9e-39159
NC_007946:3125577:3138193313819331395361344Escherichia coli UTI89, complete genomeN-acetylmuramoyl-L-alanine amidase AmiC precursor9e-39159
NC_010498:3023442:3036388303638830376411254Escherichia coli SMS-3-5, complete genomeN-acetylmuramoyl-L-alanine amidase AmiC9e-39159
NC_008253:2965573:2978391297839129796441254Escherichia coli 536, complete genomeputative amidase9e-39159
NC_011742:3057444:3070072307007230713251254Escherichia coli S88 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase9e-39159
NC_011745:3197584:3210529321052932117821254Escherichia coli ED1a chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase9e-39159
NC_013361:3823347:3836293383629338375461254Escherichia coli O26:H11 str. 11368 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase9e-39159
NC_007298:3271071:3293633329363332949821350Dechloromonas aromatica RCB, complete genomeCell wall hydrolase/autolysin7e-37153
NC_009654:2958316:2979555297955529808831329Marinomonas sp. MWYL1, complete genomeN-acetylmuramoyl-L-alanine amidase4e-35147
NC_015276:2804874:2819148281914828204761329Marinomonas mediterranea MMB-1 chromosome, complete genomecell wall hydrolase/autolysin1e-34145
NC_014500:4257145:4257145425714542588211677Dickeya dadantii 3937 chromosome, complete genomeN-acetylmuramoyl-l-alanine amidase II2e-28125
NC_016632:120500:1329301329301342761347Serratia symbiotica str. 'Cinara cedri' chromosome, completeN-acetylmuramoyl-l-alanine amidase II2e-23108
NC_012691:2614603:2614603261460326161981596Tolumonas auensis DSM 9187, complete genomeN-acetylmuramoyl-L-alanine amidase3e-23108
NC_010519:1802294:1802294180229418035021209Haemophilus somnus 2336 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase5e-23107
NC_016513:1185241:1189805118980511912921488Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeN-acetylmuramoyl-L-alanine amidase5e-23107
NC_013416:875758:8803218803218818081488Aggregatibacter actinomycetemcomitans D11S-1, complete genomeN-acetylmuramoyl-L-alanine amidase5e-23107
NC_020126:2883194:288603228860322886841810Myxococcus stipitatus DSM 14675, complete genomeN-acetylmuramoyl-L-alanine amidase9e-2096.7
NC_014909:86000:8711587115884791365Candidatus Blochmannia vafer str. BVAF chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase6e-1994
NC_005061:65861:8349183491847501260Candidatus Blochmannia floridanus, complete genomeN-acetylmuramoyl-L-alanine amidase2e-1892.4
NC_015520:3060495:306407430640743064778705Mahella australiensis 50-1 BON chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase8e-1683.6
NC_015589:1630461:163505816350581635783726Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase1e-1376.6
NC_008255:1344674:134540813454081346205798Cytophaga hutchinsonii ATCC 33406, complete genomeN-acetylmuramoyl-L-alanine amidase I5e-1374.3
NC_019970:2551607:2572748257274825741781431Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeN-acetylmuramoyl-L-alanine amidase5e-1374.3
NC_014973:1941500:1960295196029519615721278Geobacter sp. M18 chromosome, complete genomecell wall hydrolase/autolysin9e-1373.6
NC_011146:1998981:2017847201784720191061260Geobacter bemidjiensis Bem, complete genomecell wall hydrolase/autolysin1e-1273.2
NC_015555:2259500:2300952230095223023821431Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeN-acetylmuramoyl-L-alanine amidase1e-1272.8
NC_007760:3848190:387012238701223870871750Anaeromyxobacter dehalogenans 2CP-C, complete genomeN-acetylmuramoyl-L-alanine amidase4e-1168.2
NC_004342:3370310:3393746339374633948371092Leptospira interrogans serovar Lai str. 56601 chromosome I,N-acetylmuramoyl-L-alanine amidase1e-1066.6
NC_014313:2059933:2059933205993320612041272Hyphomicrobium denitrificans ATCC 51888 chromosome, completecell wall hydrolase/autolysin1e-1066.6
NC_008095:4669947:4670944467094446727431800Myxococcus xanthus DK 1622, complete genomeN-acetylmuramoyl-L-alanine amidase domain protein2e-1065.9
NC_016751:1623756:1642310164231016436831374Marinitoga piezophila KA3 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase4e-1065.1
NC_010424:1563033:1592155159215515944102256Candidatus Desulforudis audaxviator MP104C, complete genomeN-acetylmuramoyl-L-alanine amidase5e-1064.3
NC_016584:233486:254592254592255323732Desulfosporosinus orientis DSM 765 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase5e-0961.2
NC_014371:1358615:1369373136937313707041332Prevotella melaninogenica ATCC 25845 chromosome chromosome II,N-acetylmuramoyl-L-alanine amidase2e-0858.9
NC_015966:2337833:2358239235823923594591221Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomecell wall hydrolase/autolysin1e-0756.6
NC_019908:1043401:104251710425171043449933Brachyspira pilosicoli P43/6/78 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase1e-0653.1
NC_009922:315870:3336633336633350961434Alkaliphilus oremlandii OhILAs, complete genomeSpoIID/LytB domain2e-0652.8
NC_016593:868500:8686788686788700241347Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeN-acetylmuramoyl-L-alanine amidase6e-0650.8