Pre_GI: BLASTP Hits

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Query: NC_017328:1075535:1090378 Shigella flexneri 2002017 chromosome, complete genome

Start: 1090378, End: 1090674, Length: 297

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010473:247429:267096267096267722627Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-6 prophage; conserved protein3e-28123
NC_000913:272071:291546291546292172627Escherichia coli K12, complete genomeCP4-6 prophage; conserved protein3e-28123
AC_000091:273325:291546291546292172627Escherichia coli W3110 DNA, complete genomehypothetical protein3e-28123
NC_013353:3627355:365602836560283656297270Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-2098.6
AP010958:3627355:365602836560283656297270Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein1e-2098.6
NC_013941:3676146:370425037042503704447198Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-2097.8
NC_008253:3122148:315567631556763155873198Escherichia coli 536, complete genomehypothetical protein8e-1992.4
NC_012759:2633949:264438126443812645007627Escherichia coli BW2952 chromosome, complete genomeCP4-57 prophage protein1e-1891.7
NC_010473:2839902:285033428503342850960627Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-57 prophage; predicted protein1e-1891.7
AC_000091:2747520:275920327592032759829627Escherichia coli W3110 DNA, complete genomehypothetical protein1e-1891.7
NC_000913:2746886:275856927585692759195627Escherichia coli K12, complete genomeCP4-57 prophage; predicted protein1e-1891.7
NC_015761:299386:308796308796309416621Salmonella bongori NCTC 12419, complete genomeprophage protein2e-1684.7
NC_004431:279868:287365287365287607243Escherichia coli CFT073, complete genomehypothetical protein2e-1580.9
NC_012912:1053618:107241210724121073035624Dickeya zeae Ech1591, complete genomeCP4-57 prophage; hypothetical protein1e-1478.2
NC_008322:2077628:208846620884662089143678Shewanella sp. MR-7, complete genomehypothetical protein2e-1374.7
NC_005139:796546:806984806984807628645Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein6e-1372.8
NC_015663:1869000:187942718794271879816390Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein1e-1272
NC_012668:1688500:169647516964751696768294Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein1e-1168.9
NC_016445:1363831:142214014221401422433294Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein1e-1168.9
NC_008577:2115440:212463021246302125307678Shewanella sp. ANA-3 chromosome 1, complete sequencehypothetical protein9e-1268.9
NC_010634:1342393:135022813502281350812585Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein1e-1168.6
AP010958:2455052:247193524719352472504570Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-1167.8
NC_013353:2455052:247193524719352472504570Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-1167.8
AP010958:3627355:365744336574433658012570Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-1167.8
NC_013353:3627355:365744336574433658012570Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-1167.8
CP002797:2062006:208273220827322083301570Escherichia coli NA114, complete genomehypothetical protein4e-1166.6
NC_012691:1250385:127024212702421270910669Tolumonas auensis DSM 9187, complete genomehypothetical protein9e-1165.5
NC_009832:1946401:195677919567791957375597Serratia proteamaculans 568, complete genomehypothetical protein2e-1064.3
NC_015379:908904:935764935764936426663Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Hypothetical protein; putative prophage2e-1064.3
NC_013456:212150:228379228379229041663Vibrio sp. Ex25 chromosome 1, complete genomehypothetical protein3e-1063.9
NC_012691:2476223:249796124979612498647687Tolumonas auensis DSM 9187, complete genomehypothetical protein3e-1063.9
NC_020181:5130513:514061751406175141201585Enterobacter aerogenes EA1509E, complete genomeFIG00947185: hypothetical protein5e-1063.2
NC_004431:3409389:348439734843973484966570Escherichia coli CFT073, complete genomehypothetical protein9e-1062.4
NC_011751:3453683:350750035075003508105606Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-0962.4
NC_020418:116500:136581136581137168588Morganella morganii subsp. morganii KT, complete genometransposase1e-0961.6
NC_009092:1441813:145080814508081451473666Shewanella loihica PV-4, complete genometransposase2e-0961.2
NC_014618:690056:703227703227703925699Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein4e-0960.1
NC_009708:915814:921173921173921802630Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein7e-0959.3
NC_013592:446092:463175463175463804630Dickeya dadantii Ech586, complete genomehypothetical protein1e-0858.9
NC_008321:1993541:200569020056902006352663Shewanella sp. MR-4, complete genomehypothetical protein1e-0858.5
NC_013421:1505176:151089815108981511509612Pectobacterium wasabiae WPP163, complete genomehypothetical protein1e-0755.5
NC_009457:1444449:150384215038421504060219Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein2e-0754.7
NC_017270:1755552:178792217879221788140219Vibrio cholerae LMA3984-4 chromosome chromosome I, completehypothetical protein2e-0754.7
NC_016944:1978058:199705719970571997266210Vibrio cholerae IEC224 chromosome I, complete sequencehypothetical protein3e-0753.9
NC_009901:1516340:152731215273121527938627Shewanella pealeana ATCC 700345, complete genometransposase4e-0753.5
NC_010322:5293652:531395953139595314558600Pseudomonas putida GB-1 chromosome, complete genometransposase7e-0752.8
NC_009708:915814:924077924077924703627Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein9e-0752.4
NC_013716:5201097:523347852334785234047570Citrobacter rodentium ICC168, complete genomehypothetical protein3e-0650.8