Pre_GI: BLASTP Hits

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Query: NC_017319:192482:198752 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 198752, End: 199123, Length: 372

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004851:191709:198803198803199195393Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceoriT nicking and unwinding protein5e-59225
NC_007385:157516:1693421693421736254284Shigella sonnei Ss046 plasmid pSS_046, complete sequenceoriT nicking and unwinding protein, fragment4e-58223
NC_007608:97092:102927102927103346420Shigella boydii Sb227 plasmid pSB4_227, complete sequenceoriT nicking and unwinding protein, fragment8e-54208
NC_007607:87000:960909609096509420Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceoriT nicking and unwinding protein, fragment2e-53207
NC_009378:106193:1061931061931114335241Yersinia pestis Pestoides F plasmid MT, complete sequenceconjugal transfer nickase/helicase TraI3e-49193
NC_016846:24500:4675446754520125259Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,conjugal transfer nickase/helicase TraI3e-46183
NC_008322:1186000:1188914118891411920213108Shewanella sp. MR-7, complete genomeTrwC protein2e-22103
NC_009484:2660048:2674385267438526771562772Acidiphilium cryptum JF-5 chromosome, complete genomeexonuclease V subunit alpha7e-1992.4
NC_007794:2304768:2324303232430323259311629Novosphingobium aromaticivorans DSM 12444, complete genomeTrwC protein3e-1684
NC_007722:851129:8691878691878720992913Erythrobacter litoralis HTCC2594, complete genomeTrwC protein2e-1580.9
NC_016626:1751159:1751159175115917542153057Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative traC, type IV secretion system7e-1579.3
NC_007722:168937:1893461893461922582913Erythrobacter litoralis HTCC2594, complete genomeTrwC protein2e-1477.4
NC_009007:57804:7601176011793463336Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequenceTraI3e-1477
NC_004460:708416:7159707159707217565787Vibrio vulnificus CMCP6 chromosome II, complete sequenceATP-dependent exoDNAse, alpha subunit1e-1272
NC_015377:34445:5672856728596222895Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequenceTrwC protein2e-1270.9
NC_010660:175200:182964182964183155192Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence4e-1270.1
NC_011916:467106:4887684887684915782811Caulobacter crescentus NA1000 chromosome, complete genomeDNA relaxase/conjugal transfer nickase-helicase TrwC7e-1269.3
NC_012483:729000:752677752677753114438Acidobacterium capsulatum ATCC 51196, complete genomeDNA helicase domain protein1e-1168.9
NC_015458:327009:3562813562813591782898Pusillimonas sp. T7-7 chromosome, complete genomeTrwC1e-1168.2
NC_016631:3917253:3931643393164339343962754Granulicella mallensis MP5ACTX8 chromosome, complete genomeconjugative relaxase domain-containing protein3e-1167
NC_014819:25765:4311743117462603144Asticcacaulis excentricus CB 48 plasmid pASTEX02, completeconjugative relaxase domain protein1e-1065.5
NC_011891:1225000:1242880124288012456602781Anaeromyxobacter dehalogenans 2CP-1, complete genomeconjugative relaxase domain protein2e-1064.3
NC_012483:3672768:3676616367661636793962781Acidobacterium capsulatum ATCC 51196, complete genomeconjugative relaxase domain protein3e-1063.9
NC_012483:3731542:3754841375484137575942754Acidobacterium capsulatum ATCC 51196, complete genomeconjugative relaxase domain protein5e-1063.2
NC_009998:62000:6726667266732265961Shewanella baltica OS195 plasmid pS19501, complete sequenceconjugative transfer relaxase protein TraI1e-0962
NC_013422:991500:1012572101257210154032832Halothiobacillus neapolitanus c2, complete genomeconjugative relaxase domain protein2e-0960.8
NC_010606:25090:2872928729308792151Acinetobacter baumannii ACICU plasmid pACICU2, complete sequenceTrwC protein7e-0959.3
NC_010170:3944228:3975774397577439785002727Bordetella petrii, complete genomeconjugal transfer protein4e-0650.1
NC_020453:3950838:3987555398755539886791125Agromonas oligotrophica S58 DNA, complete genomeputative ATP-dependent exoDNAse (exonuclease V) subunit alpha5e-0649.7