Pre_GI: BLASTP Hits

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Query: NC_017269:303500:318521 Vibrio cholerae LMA3984-4 chromosome II, complete sequence

Start: 318521, End: 318835, Length: 315

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016945:370471:415087415087415401315Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein4e-54209
NC_012667:931390:970665970665970979315Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein4e-54209
NC_012583:361241:424519424519424833315Vibrio cholerae O395 chromosome chromosome II, complete sequencevirulence gene repressor RsaL4e-54209
NC_009456:787322:839109839109839423315Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein4e-54209
NC_002506:370629:415268415268415582315Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein4e-54209
NC_021150:4929670:494265849426584942972315Azotobacter vinelandii CA6, complete genomehypothetical protein3e-1890.5
NC_012560:4929683:494267149426714942985315Azotobacter vinelandii DJ, complete genomehypothetical protein3e-1890.5
NC_014216:1197704:121671612167161217003288Desulfurivibrio alkaliphilus AHT2 chromosome, complete genometranscriptional regulator, XRE family6e-1682.8
NC_013960:243884:253670253670253984315Nitrosococcus halophilus Nc4 chromosome, complete genomehelix-turn-helix domain protein5e-1166.2
NC_013960:1258000:126262312626231262910288Nitrosococcus halophilus Nc4 chromosome, complete genomehelix-turn-helix domain protein7e-1062.4
NC_015572:4618467:463528346352834635564282Methylomonas methanica MC09 chromosome, complete genomeXRE family transcriptional regulator8e-1062.4
NC_014837:1144500:116031411603141160637324Pantoea sp. At-9b chromosome, complete genomeXRE family transcriptional regulator3e-0960.8
NC_007517:344237:354581354581354892312Geobacter metallireducens GS-15, complete genometranscriptional regulator, XRE family4e-0960.1
NC_007484:293763:312416312416312724309Nitrosococcus oceani ATCC 19707, complete genometranscriptional regulator, XRE family6e-0959.3
NC_014722:846084:887212887212887508297Burkholderia rhizoxinica HKI 454, complete genometranscriptional repressor8e-0958.9
NC_011094:3853036:385962438596243859947324Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-binding protein9e-0958.9
NC_004631:3841975:385482638548263855149324Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative DNA-binding protein9e-0958.9
NC_011080:3941909:394849739484973948820324Salmonella enterica subsp. enterica serovar Newport str. SL254,DNA-binding protein9e-0958.9
NC_003198:3855157:386933638693363869659324Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative DNA-binding protein9e-0958.9
NC_015942:1047576:106278710627871063098312Acidithiobacillus ferrivorans SS3 chromosome, complete genomeXRE family transcriptional regulator1e-0858.9
NC_011149:3895921:390364939036493903972324Salmonella enterica subsp. enterica serovar Agona str. SL483,DNA-binding protein1e-0858.5
NC_003197:3971905:397913739791373979460324Salmonella typhimurium LT2, complete genomeputative DNA-binding protein1e-0858.2
NC_011083:3985618:399334639933463993669324Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,DNA-binding protein1e-0858.2
NC_016810:3993863:400045040004504000773324Salmonella enterica subsp. enterica serovar Typhimurium strputative DNA-binding protein1e-0858.2
NC_016856:3985597:399282939928293993152324Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative DNA-binding protein1e-0858.2
NC_016857:3993864:400045140004514000774324Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative DNA-binding protein1e-0858.2
NC_016860:3995445:400203340020334002356324Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding protein1e-0858.2
NC_016863:3933848:394043639404363940759324Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative DNA-binding protein1e-0858.2
NC_006511:3759550:376726937672693767592324Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative DNA-binding protein1e-0858.2
NC_006905:3913988:391758039175803917903324Salmonella enterica subsp. enterica serovar Choleraesuis strputative helix-turn-helix protein1e-0858.2
NC_010102:3919999:392723139272313927554324Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0858.2
NC_011147:3755725:376294837629483763271324Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding protein1e-0858.2
NC_012125:3905782:391237039123703912693324Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-binding protein1e-0858.2
NC_012912:4167429:418443541844354184758324Dickeya zeae Ech1591, complete genometranscriptional regulator, XRE family3e-0857
NC_014562:3985500:400284740028474003170324Pantoea vagans C9-1 chromosome, complete genomePutative HTH-type transcriptional regulatory protein5e-0856.6
NC_009483:936000:939563939563939874312Geobacter uraniireducens Rf4 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0856.6
NC_014960:2371989:238808623880862388379294Anaerolinea thermophila UNI-1, complete genomeXre family DNA-binding protein6e-0856.2
NC_010801:550270:561245561245561532288Burkholderia multivorans ATCC 17616 chromosome 3, completeputative transcriptional regulator7e-0856.2
NC_010087:319063:363326363326363613288Burkholderia multivorans ATCC 17616 chromosome 3, completetranscriptional regulator, XRE family7e-0856.2
NC_002655:4653160:469762746976274697950324Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-0755.5
NC_002695:4584177:462864446286444628967324Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA-binding protein1e-0755.5
NC_011353:4688000:473174847317484732071324Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDNA-binding protein1e-0755.5
NC_013008:4643825:468778946877894688112324Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-0755.5
NC_013941:4470932:451613745161374516460324Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA-binding protein1e-0755.5
NC_011750:4390000:443710244371024437425324Escherichia coli IAI39 chromosome, complete genomeputative transcriptional regulator9e-0855.5
NC_010645:1523867:153873115387311539051321Bordetella avium 197N, complete genomehypothetical protein3e-0753.9
NC_007760:3655433:366449936644993664813315Anaeromyxobacter dehalogenans 2CP-C, complete genometranscriptional regulator, XRE family6e-0752.8
NC_008740:2989856:299940129994012999724324Marinobacter aquaeolei VT8, complete genomehelix-turn-helix domain protein2e-0651.6
NC_014153:2077647:209233220923322092637306Thiomonas intermedia K12 chromosome, complete genometranscriptional regulator, XRE family2e-0651.6
NC_015559:3645181:366265436626543662959306Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeXRE family transcriptional regulator3e-0650.4
NC_010501:5442000:545511554551155455402288Pseudomonas putida W619, complete genometranscriptional regulator, XRE family4e-0650.4
NC_021150:3200959:320919032091903209501312Azotobacter vinelandii CA6, complete genomeDNA-binding protein5e-0650.1
NC_012560:3200961:320919232091923209503312Azotobacter vinelandii DJ, complete genomeDNA-binding protein5e-0650.1
NC_015276:3829059:383324238332423833547306Marinomonas mediterranea MMB-1 chromosome, complete genometranscriptional regulator, XRE family5e-0649.7