Pre_GI: BLASTP Hits

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Query: NC_017179:1683199:1698728 Clostridium difficile BI1, complete genome

Start: 1698728, End: 1699054, Length: 327

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009699:2552195:255545625554562555737282Clostridium botulinum F str. Langeland chromosome, complete genomeVRR-NUC domain-containing protein2e-2097.8
NC_014393:937000:947208947208947486279Clostridium cellulovorans 743B chromosome, complete genomeVRR-NUC domain-containing protein9e-1888.6
NC_015519:2526047:252917425291742529452279Tepidanaerobacter sp. Re1 chromosome, complete genomeVRR-NUC domain-containing protein2e-1788.2
NC_009253:1265474:127514512751451275426282Desulfotomaculum reducens MI-1 chromosome, complete genomehypothetical protein1e-1685.1
NC_017317:1291294:130521613052161305497282Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein5e-1682.8
NC_015683:1296000:130884313088431309124282Corynebacterium ulcerans BR-AD22 chromosome, complete genomeputative protein p445e-1682.8
NC_013517:1480368:149471914947191495051333Sebaldella termitidis ATCC 33386, complete genomeVRR-NUC domain protein1e-1582
NC_017297:2531750:255559625555962555784189Clostridium botulinum F str. 230613 chromosome, complete genomeVRR-NUC domain-containing protein2e-1581.3
NC_021182:554000:568311568311568592282Clostridium pasteurianum BC1, complete genomeVRR-NUC domain-containing protein3e-1580.5
NC_012563:2680246:268340126834012683589189Clostridium botulinum A2 str. Kyoto, complete genomeVRR-NUC domain protein3e-1580.1
NC_017190:3166000:316784231678423168093252Bacillus amyloliquefaciens LL3 chromosome, complete genomehypothetical protein2e-1477.4
NC_009633:4097536:413249441324944132778285Alkaliphilus metalliredigens QYMF chromosome, complete genomeVRR_NUC domain-containing protein3e-1477
NC_016633:3069518:310611431061143106395282Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeVRR-NUC domain-containing protein4e-1476.6
NC_003909:386880:403562403562403843282Bacillus cereus ATCC 10987, complete genomephage protein, putative8e-1475.5
NC_015697:468234:477411477411477857447Lactobacillus reuteri SD2112 chromosome, complete genomeVRR-NUC domain-containing protein1e-1375.1
NC_011898:3567761:360054236005423600802261Clostridium cellulolyticum H10, complete genomeVRR-NUC domain protein2e-1373.9
NC_009706:2673906:272845927284592728740282Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein4e-1373.2
NC_011898:3367457:340175734017573402038282Clostridium cellulolyticum H10, complete genomeVRR-NUC domain protein5e-1373.2
NC_010337:2848360:289062228906222890903282Heliobacterium modesticaldum Ice1, complete genomehypothetical protein6e-1372.8
NC_015697:506494:518405518405518851447Lactobacillus reuteri SD2112 chromosome, complete genomeVRR-NUC domain-containing protein7e-1372.8
NC_014219:830966:856150856150856440291Bacillus selenitireducens MLS10 chromosome, complete genomeVRR-NUC domain protein2e-1271.2
NC_014328:303063:359324359324359605282Clostridium ljungdahlii ATCC 49587 chromosome, complete genomephage-like protein3e-1270.5
NC_017294:115500:126969126969127277309Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeVRR-NUC domain-containing protein4e-1270.1
NC_008530:1454118:146740114674011467712312Lactobacillus gasseri ATCC 33323, complete genomePhage associated protein4e-1270.1
NC_015520:2974048:299589929958992996180282Mahella australiensis 50-1 BON chromosome, complete genomeVRR-NUC domain-containing protein5e-1269.7
NC_010320:1268355:128090812809081281189282Thermoanaerobacter sp. X514 chromosome, complete genomehypothetical protein6e-1269.3
NC_015913:117966:127659127659127967309Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomehypothetical protein8e-1268.9
NC_016048:4047922:406508440650844065365282Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein1e-1168.2
NC_014393:4775452:481590048159004816178279Clostridium cellulovorans 743B chromosome, complete genomeVRR-NUC domain-containing protein2e-1167.8
NC_007168:1839382:184119918411991841477279Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein3e-1063.9
NC_021064:1211480:121825912182591218537279Propionibacterium avidum 44067, complete genomehypothetical protein9e-1062.4
NC_007297:1406796:141335714133571413632276Streptococcus pyogenes MGAS5005, complete genomehypothetical protein1e-0962
NC_012471:2080902:209310520931052093380276Streptococcus equi subsp. equi 4047, complete genomephage protein2e-0961.6
NC_008023:1426687:143170014317001431993294Streptococcus pyogenes MGAS2096, complete genomehypothetical protein1e-0961.6
NC_021064:816000:821333821333821611279Propionibacterium avidum 44067, complete genomehypothetical protein2e-0961.2
NC_008021:1401249:140781014078101408103294Streptococcus pyogenes MGAS9429, complete genomehypothetical protein2e-0960.8
NC_007432:654904:671130671130671411282Streptococcus agalactiae A909, complete genomehypothetical protein3e-0960.5
NC_017337:321155:339907339907340197291Staphylococcus aureus subsp. aureus ED133 chromosome, completephage protein3e-0960.5
NC_017338:1517723:154179815417981542088291Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeVRR-NUC domain3e-0960.5
NC_017342:1765132:176486117648611765151291Staphylococcus aureus subsp. aureus TCH60 chromosome, completephi phage protein3e-0960.5
NC_010079:1564327:158840315884031588693291Staphylococcus aureus subsp. aureus USA300_TCH1516, completehypothetical bacteriophage protein3e-0960.5
NC_007793:1574456:157445615744561574746291Staphylococcus aureus subsp. aureus USA300, complete genomehypothetical protein3e-0960.5
NC_013941:3182576:319837331983733198642270Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage associated protein3e-0960.5
NC_006086:35599:475494754947842294Streptococcus pyogenes MGAS10394, complete genomehypothetical protein6e-0959.7
NC_004606:446427:458395458395458670276Streptococcus pyogenes SSI-1, complete genomehypothetical protein5e-0959.7
NC_004070:1431146:143821514382151438490276Streptococcus pyogenes MGAS315, complete genomehypothetical protein5e-0959.7
NC_009332:1050353:105742210574221057697276Streptococcus pyogenes str. Manfredo chromosome, complete genomehypothetical protein5e-0959.7
NC_011375:749693:761827761827762120294Streptococcus pyogenes NZ131 chromosome, complete genomehypothetical protein5e-0959.7
NC_002953:998944:998944998944999234291Staphylococcus aureus subsp. aureus MSSA476, complete genomehypothetical protein1e-0858.9
NC_002952:1592000:161833716183371618627291Staphylococcus aureus subsp. aureus MRSA252, complete genomehypothetical protein1e-0858.9
NC_011660:2541632:256714825671482567426279Listeria monocytogenes HCC23 chromosome, complete genomeVRR_NUC domain protein3e-0857
NC_007712:1954808:195652519565251956833309Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-0753.9
NC_007712:1926500:193810719381071938394288Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein4e-0753.5
NC_012985:1:576957696080312Candidatus Liberibacter asiaticus str. psy62, complete genomeVRR-NUC domain-containing protein6e-0753.1
NC_014774:1210004:125392712539271254232306Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeVRR-NUC domain-containing protein3e-0650.4