Pre_GI: BLASTP Hits

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Query: NC_016945:666000:684191 Vibrio cholerae IEC224 chromosome II, complete sequence

Start: 684191, End: 685351, Length: 1161

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012667:839318:8596558596558608211167Vibrio cholerae MJ-1236 chromosome 2, complete genomeTraF-related protein4e-52205
NC_012583:683887:7038637038637050291167Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein4e-52205
NC_009456:557962:5589135589135600791167Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein4e-52205
NC_016628:193000:1993481993482005201173Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein1e-49197
NC_013457:140474:1466111466111477321122Vibrio sp. Ex25 chromosome 2, complete genomeTraF-related protein3e-49196
NC_005140:883857:8997958997959009041110Vibrio vulnificus YJ016 chromosome II, complete sequencehypothetical protein6e-48191
NC_004547:611178:6190346190346202361203Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative plasmid transfer protein1e-46187
NC_014966:919442:9301189301189311461029Vibrio vulnificus MO6-24/O chromosome II, complete sequencetraF-related protein1e-46187
NC_013421:701005:7394377394377406361200Pectobacterium wasabiae WPP163, complete genomeputative plasmid transfer protein8e-45181
NC_011745:3443371:3446437344643734476871251Escherichia coli ED1a chromosome, complete genomeputative plasmid transfer protein5e-43175
NC_014121:489500:5192025192025203981197Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-41171
NC_016816:4129299:4132852413285241340601209Pantoea ananatis LMG 5342, complete genometype IV pilus protein, TraF5e-41168
NC_010102:4557037:4574291457429145753941104Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-40166
NC_013971:335247:3380583380583392901233Erwinia amylovora ATCC 49946 chromosome, complete genomeplasmid transfer protein5e-40165
NC_013961:3413011:3432092343209234333241233Erwinia amylovora, complete genomehypothetical protein5e-40165
NC_013592:956829:9599709599709612171248Dickeya dadantii Ech586, complete genomeputative plasmid transfer protein2e-31137
CU928145:4792703:480058548005854801385801Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein, putative plasmid transfer protein (partial)2e-29130
NC_011748:4792703:480058548005854801385801Escherichia coli 55989, complete genome2e-29130
NC_017328:3088907:309906630990663099866801Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-29130
NC_004741:3041294:305149230514923052253762Shigella flexneri 2a str. 2457T, complete genomehypothetical protein6e-29128
NC_004337:3049118:305931630593163060077762Shigella flexneri 2a str. 301, complete genomehypothetical protein6e-29128
NC_016822:3420826:342900434290043429765762Shigella sonnei 53G, complete genomeputative plasmid transfer protein3e-28126
NC_007384:3383983:339417933941793394844666Shigella sonnei Ss046, complete genomehypothetical protein3e-28126