Pre_GI: BLASTP Hits

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Query: NC_016822:3420826:3429004 Shigella sonnei 53G, complete genome

Start: 3429004, End: 3429765, Length: 762

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011745:3443371:3446437344643734476871251Escherichia coli ED1a chromosome, complete genomeputative plasmid transfer protein5e-146516
NC_011748:4792703:480058548005854801385801Escherichia coli 55989, complete genome4e-144510
CU928145:4792703:480058548005854801385801Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein, putative plasmid transfer protein (partial)4e-144510
NC_017328:3088907:309906630990663099866801Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-143508
NC_004741:3041294:305149230514923052253762Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-143507
NC_004337:3049118:305931630593163060077762Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-143507
NC_007384:3383983:339417933941793394844666Shigella sonnei Ss046, complete genomehypothetical protein9e-127452
NC_010102:4557037:4574291457429145753941104Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-96351
NC_014121:489500:5192025192025203981197Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-94343
NC_013421:701005:7394377394377406361200Pectobacterium wasabiae WPP163, complete genomeputative plasmid transfer protein9e-75280
NC_004547:611178:6190346190346202361203Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative plasmid transfer protein5e-74277
NC_013961:3413011:3432092343209234333241233Erwinia amylovora, complete genomehypothetical protein6e-67254
NC_013971:335247:3380583380583392901233Erwinia amylovora ATCC 49946 chromosome, complete genomeplasmid transfer protein6e-67254
NC_016816:4129299:4132852413285241340601209Pantoea ananatis LMG 5342, complete genometype IV pilus protein, TraF4e-67254
NC_013592:956829:9599709599709612171248Dickeya dadantii Ech586, complete genomeputative plasmid transfer protein5e-61234
NC_016945:666000:6841916841916853511161Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein1e-28126
NC_013457:140474:1466111466111477321122Vibrio sp. Ex25 chromosome 2, complete genomeTraF-related protein2e-2099.8
NC_009456:557962:5589135589135600791167Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein2e-1996.3
NC_012583:683887:7038637038637050291167Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein2e-1996.3
NC_012667:839318:8596558596558608211167Vibrio cholerae MJ-1236 chromosome 2, complete genomeTraF-related protein2e-1996.3
NC_016628:193000:1993481993482005201173Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein2e-1995.9
NC_005140:883857:8997958997959009041110Vibrio vulnificus YJ016 chromosome II, complete sequencehypothetical protein1e-1686.7
NC_014966:919442:9301189301189311461029Vibrio vulnificus MO6-24/O chromosome II, complete sequencetraF-related protein6e-1684.7