Pre_GI: BLASTP Hits

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Query: NC_016822:246715:262786 Shigella sonnei 53G, complete genome

Start: 262786, End: 263547, Length: 762

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CP002185:234719:250784250784251545762Escherichia coli W, complete genomeT6SS-associated protein1e-136485
NC_005126:349658:391509391509392279771Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein5e-81300
NC_012962:293976:311260311260312030771Photorhabdus asymbiotica, complete genomehypothetical protein2e-80298
NC_013892:274297:278546278546279313768Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein3e-77288
NC_014228:4331327:434755743475574348324768Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (probable component of SST VI cluster)1e-76286
NC_008570:1986466:200714520071452007855711Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein4e-61234
NC_013421:1143500:116609911660991166875777Pectobacterium wasabiae WPP163, complete genometype IV / VI secretion system protein, DotU family1e-55216
NC_013592:1424560:144682414468241447600777Dickeya dadantii Ech586, complete genometype IV / VI secretion system protein, DotU family2e-54212
NC_002947:4604582:460945446094544610386933Pseudomonas putida KT2440, complete genomehypothetical protein8e-35147
NC_012913:1832500:184591218459121846769858Aggregatibacter aphrophilus NJ8700, complete genomeVasF2e-32139
NC_015968:4117835:414576341457634146551789Enterobacter asburiae LF7a chromosome, complete genomeDotU family type IV / VI secretion system protein2e-32139
NC_015740:110633:129227129227130108882Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein5e-31134
NC_009439:101174:100296100296101177882Pseudomonas mendocina ymp, complete genomehypothetical protein6e-30131
NC_004578:6138669:616088461608846161759876Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-28125
NC_017192:2216914:223378822337882234642855Arcobacter sp. L, complete genomehypothetical protein1e-26120
NC_007645:4423507:444428844442884445169882Hahella chejuensis KCTC 2396, complete genomehypothetical protein2e-25116
NC_010805:1576735:1584211158421115855091299Burkholderia multivorans ATCC 17616 chromosome 2, completeOmpA/MotB domain protein2e-2099.4
NC_010086:871723:8897988897988910931296Burkholderia multivorans ATCC 17616 chromosome 2, completetype VI secretion system OmpA/MotB family protein2e-2099.4
NC_004603:1519904:152121115212111522017807Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein3e-2099
NC_008313:691692:7089587089587102351278Ralstonia eutropha H16 chromosome 1, complete sequenceouter membrane protein2e-1996.7
NC_007511:1094050:1108818110881811101221305Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein2e-1893.2
NC_008391:271254:2861002861002873981299Burkholderia cepacia AMMD chromosome 2, complete sequenceOmpA/MotB domain protein2e-1892.8
NC_004605:1092476:1098604109860410999051302Vibrio parahaemolyticus RIMD 2210633 chromosome II, completehypothetical protein9e-1684
NC_009802:114749:135621135621136385765Campylobacter concisus 13826, complete genomeaspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B)5e-1581.6
NC_014733:1223359:1240286124028612416201335Methylovorus sp. MP688 chromosome, complete genomeompa/motb domain protein6e-1581.3
NC_012856:1585989:159849215984921599475984Ralstonia pickettii 12D chromosome 1, complete genometype IV / VI secretion system protein, DotU family1e-1480.1
NC_013282:1256769:1279380127938012806541275Cronobacter turicensis, complete genomehypothetical protein2e-1479.7
NC_011988:1036618:1059839105983910613741536Agrobacterium vitis S4 chromosome 2, complete genomeOmpA-type porin3e-1169.3
NC_008314:1275617:1290293129029312916001308Ralstonia eutropha H16 chromosome 2, complete sequenceouter membrane protein, OmpA/MotB-family3e-1169.3
NC_004917:241053:242444242444243232789Helicobacter hepaticus ATCC 51449, complete genomehypothetical protein3e-1168.9
NC_008391:271254:2915422915422927561215Burkholderia cepacia AMMD chromosome 2, complete sequenceOmpA/MotB domain protein1e-0963.5
NC_010086:871723:8952398952398964561218Burkholderia multivorans ATCC 17616 chromosome 2, completetype IV / VI secretion system protein, DotU family4e-0962
NC_010805:1576735:1578848157884815800651218Burkholderia multivorans ATCC 17616 chromosome 2, completeputative OmpA/MotB family outer membrane protein4e-0962
NC_007511:1094050:1114275111427511154891215Burkholderia sp. 383 chromosome 2, complete sequenceouter membrane protein, OmpA/MotB family3e-0859.3
NC_007511:2072838:208231820823182083244927Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein3e-0858.9
NC_010086:20876:345453454535486942Burkholderia multivorans ATCC 17616 chromosome 2, completeconserved hypothetical protein4e-0858.5
NC_010805:2432167:243981824398182440759942Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein4e-0858.5
NC_014355:1865003:188203218820321882730699Candidatus Nitrospira defluvii, complete genomehypothetical protein5e-0755.1
NC_011283:942594:959882959882960547666Klebsiella pneumoniae 342 chromosome, complete genometype IV/VI secretion system protein, DotU family5e-0651.6