Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1456668 Shigella sonnei 53G, complete genome

Start: 1456668, End: 1458176, Length: 1509

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017047:3085000:3112046311204631134101365Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein7e-139494
NC_009778:2227627:2256804225680422583241521Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-94347
NC_012416:1079661:1098804109880411002221419Wolbachia sp. wRi, complete genomeprophage portal protein, lambda family6e-28125
NC_012416:573202:5923455923455937631419Wolbachia sp. wRi, complete genomeportal protein, lambda family6e-28125
NC_010981:314745:3472443472443486621419Wolbachia pipientis, complete genomePutative phage portal protein2e-27124
NC_010981:242500:2566202566202580381419Wolbachia pipientis, complete genomePutative phage portal protein2e-27124
NC_010981:314745:3301403301403315581419Wolbachia pipientis, complete genomePutative phage portal protein2e-27124
NC_011958:976500:1012885101288510143871503Rhodobacter sphaeroides KD131 chromosome 2, complete genomeBacteriophage capsid protein5e-27122
NC_010981:1371265:1381740138174013831521413Wolbachia pipientis, complete genomePutative phage portal protein2e-26120
NC_012416:753500:7757377757377771581422Wolbachia sp. wRi, complete genomeportal protein, lambda family1e-25118
NC_004129:2201780:2222393222239322238741482Pseudomonas fluorescens Pf-5, complete genomeportal protein, lambda family3e-21103
NC_016830:5031819:5032976503297650344571482Pseudomonas fluorescens F113 chromosome, complete genomephage portal lambda family9e-21102
NC_012724:3100430:3101527310152731030171491Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein4e-2099.8
NC_009659:3103601:3110568311056831121001533Janthinobacterium sp. Marseille chromosome, complete genomephage portal protein6e-2099.4
NC_014664:3003633:3023547302354730248871341Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomephage portal protein, lambda family9e-1995.5
NC_011420:36272:5467754677561641488Rhodospirillum centenum SW, complete genomephage portal protein, lambda family2e-1894
NC_009253:1265474:1281892128189212834871596Desulfotomaculum reducens MI-1 chromosome, complete genomelambda family phage portal protein2e-1790.9
NC_010382:3643288:3661217366121736627941578Lysinibacillus sphaericus C3-41, complete genomeportal protein (head protein Gp4)1e-1585.1
NC_013960:979556:9858189858189872961479Nitrosococcus halophilus Nc4 chromosome, complete genomephage portal protein, lambda family3e-1480.1
NC_009053:553298:5780455780455795651521Actinobacillus pleuropneumoniae L20, complete genomebacteriophage capsid protein7e-1375.9
NC_011740:2769961:2769961276996127714721512Escherichia fergusonii ATCC 35469, complete genomePutative head-tail preconnector protein from phage origin8e-1375.5
NC_014011:1139818:1148538114853811500221485Aminobacterium colombiense DSM 12261 chromosome, complete genomephage portal protein, lambda family2e-1273.9
NC_020126:2381380:2386474238647423879611488Myxococcus stipitatus DSM 14675, complete genomephage portal protein1e-1172
NC_017033:1052000:1077361107736110789621602Frateuria aurantia DSM 6220 chromosome, complete genomephage portal protein, lambda family3e-1170.5
NC_014632:1112733:1132914113291411344551542Ilyobacter polytropus DSM 2926 chromosome, complete genomephage portal protein, lambda family5e-1169.7
NC_011094:638552:6700106700106715451536Salmonella enterica subsp. enterica serovar Schwarzengrund strphage portal protein, lambda family protein5e-1169.7
NC_007907:2534462:2534462253446225358861425Desulfitobacterium hafniense Y51, complete genomehypothetical protein7e-1169.3
NC_013353:1472506:1471059147105914725611503Escherichia coli O103:H2 str. 12009, complete genomeportal protein8e-1168.9
AP010958:1472506:1471059147105914725611503Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative portal protein8e-1168.9
NC_016831:1734292:1736297173629717378441548Salmonella enterica subsp. enterica serovar Gallinarum/pullorumPutative Prophage Protein1e-1068.6
NC_002695:2893951:2914376291437629158781503Escherichia coli O157:H7 str. Sakai, complete genomeputative portal protein1e-1068.2
NC_011205:1345511:1375774137577413773211548Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage portal protein, lambda family2e-1067.8
NC_011353:1761977:1762189176218917636911503Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephage portal protein, lambda family2e-1067.8
NC_013008:1761165:1761165176116517626671503Escherichia coli O157:H7 str. TW14359 chromosome, complete genomephage portal protein, lambda family2e-1067.8
NC_013364:3339768:3339768333976833412701503Escherichia coli O111:H- str. 11128, complete genomeputative portal protein2e-1067.4
NC_011770:1456667:1456667145666714583911725Pseudomonas aeruginosa LESB58, complete genomePutative portal protein6e-1066.2
NC_008563:5011997:5027194502719450287741581Escherichia coli APEC O1, complete genomeputative capsid protein7e-1065.9
NC_011742:4962008:4977204497720449787841581Escherichia coli S88 chromosome, complete genomeportal protein (head-tail preconnector protein) from prophage7e-1065.9
NC_011740:4520373:4534672453467245362521581Escherichia fergusonii ATCC 35469, complete genomeputative portal protein (head-tail preconnector protein) from putative prophage9e-1065.5
NC_011751:1859606:1861578186157818631581581Escherichia coli UMN026 chromosome, complete genomeputative portal protein1e-0965.5
CU928145:1773642:1776024177602417776041581Escherichia coli 55989 chromosome, complete genomeputative portal protein (head-tail preconnector protein) from putative prophage1e-0965.5
NC_011748:1773642:1776024177602417776041581Escherichia coli 55989, complete genomeputative portal protein (head-tail preconnector protein) from putative prophage1e-0965.5
NC_014121:1682638:1703471170347117049701500Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage portal protein, lambda family2e-0964.3
NC_013361:2138716:2140688214068821421961509Escherichia coli O26:H11 str. 11368 chromosome, complete genomeportal protein2e-0964.3
NC_007494:739403:738429738429739406978Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence8e-0962.4
NC_007494:714525:738429738429739406978Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence8e-0962.4
NC_016612:3314846:3342349334234933438481500Klebsiella oxytoca KCTC 1686 chromosome, complete genomephage portal protein, lambda family3e-0860.5
NC_015873:1193843:1230053123005312316451593Megasphaera elsdenii DSM 20460, complete genomephage portal protein5e-0756.6
NC_016613:2160356:2170977217097721725031527Vibrio sp. EJY3 chromosome 1, complete sequencephage portal protein, lambda family protein9e-0652.4