Pre_GI: BLASTP Hits

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Query: NC_016822:1431200:1444428 Shigella sonnei 53G, complete genome

Start: 1444428, End: 1445171, Length: 744

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014306:1810548:181883218188321819554723Erwinia billingiae Eb661, complete genomepredicted endonuclease4e-96350
NC_014836:2620871:263431826343182635073756Desulfurispirillum indicum S5 chromosome, complete genomeHNH endonuclease2e-63241
NC_021150:4929670:493840049384004939143744Azotobacter vinelandii CA6, complete genomehypothetical protein7e-61233
NC_012560:4929683:493841349384134939156744Azotobacter vinelandii DJ, complete genomehypothetical protein7e-61233
AP010958:922937:935324935324936064741Escherichia coli O103:H2 str. 12009 DNA, complete genomeendonuclease-like protein8e-54210
NC_013353:922937:935324935324936064741Escherichia coli O103:H2 str. 12009, complete genomeendonuclease8e-54210
NC_013364:928486:940873940873941613741Escherichia coli O111:H- str. 11128, complete genomeendonuclease-like protein8e-54210
NC_013730:3729626:3748609374860937497121104Spirosoma linguale DSM 74, complete genomeHNH endonuclease2e-35149
NC_012673:2064298:2073393207339320744331041Exiguobacterium sp. AT1b, complete genomeHNH endonuclease1e-33143
NC_010498:4899167:490781649078164908457642Escherichia coli SMS-3-5, complete genomeHNH endonuclease domain-containing protein1e-32140
NC_013361:5580741:558447255844725585122651Escherichia coli O26:H11 str. 11368 chromosome, complete genomeendonuclease3e-32139
NC_019896:3491000:350933435093343509681348Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein3e-31135
NC_012108:442493:4548374548374559641128Desulfobacterium autotrophicum HRM2, complete genomeputative 5-methylcytosine-specific restriction enzyme A2e-30132
NC_014934:219000:229015229015229824810Cellulophaga algicola DSM 14237 chromosome, complete genomehnh endonuclease4e-30131
NC_009648:5119271:513275851327585133360603Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein1e-28126
NC_011283:4966471:497312949731294973767639Klebsiella pneumoniae 342 chromosome, complete genomeHNH endonuclease domain protein2e-28125
NC_012731:600518:653235653235653873639Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein3e-28125
NC_014206:2807879:281779028177902818551762Geobacillus sp. C56-T3 chromosome, complete genomeHNH endonuclease3e-28125
NC_011206:1379068:138427413842741384912639Acidithiobacillus ferrooxidans ATCC 53993, complete genomerestriction endonuclease-like protein3e-27122
NC_006138:1735723:174333417433341743696363Desulfotalea psychrophila LSv54, complete genomehypothetical protein2e-27122
NC_015942:1920693:193747819374781938242765Acidithiobacillus ferrivorans SS3 chromosome, complete genomeHNH endonuclease3e-26119
NC_008346:2523289:253364525336452534469825Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeHnh endonuclease4e-26118
NC_021184:1729867:1768097176809717693171221Desulfotomaculum gibsoniae DSM 7213, complete genomeputative restriction endonuclease8e-25114
NC_014220:70490:896678966790407741Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeHNH endonuclease4e-24111
NC_017506:3248724:326074032607403261546807Marinobacter adhaerens HP15 chromosome, complete genomeHNH endonuclease4e-24111
NC_009512:3618055:362657136265713627377807Pseudomonas putida F1, complete genomeHNH endonuclease1e-23109
NC_010814:243384:261791261791262636846Geobacter lovleyi SZ, complete genomeHNH endonuclease8e-23107
NC_008463:4743296:476014847601484760960813Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein2e-22106
NC_002516:891000:896416896416897228813Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-22106
NC_010322:1817598:185091618509161851860945Pseudomonas putida GB-1 chromosome, complete genomerestriction endonuclease-like protein5e-22104
NC_010322:5293652:530890053089005309745846Pseudomonas putida GB-1 chromosome, complete genomeHNH endonuclease8e-21100
NC_014973:3452100:346505734650573465821765Geobacter sp. M18 chromosome, complete genomeHNH endonuclease2e-2099.4
NC_013730:3729626:375240937524093753212804Spirosoma linguale DSM 74, complete genomeHNH endonuclease1e-1996.7
NC_010571:637398:653983653983654768786Opitutus terrae PB90-1, complete genomerestriction endonuclease-like protein4e-1995.1
NC_014216:2538500:255566525556652555979315Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomehypothetical protein3e-1892
NC_006177:2398482:242404824240482424860813Symbiobacterium thermophilum IAM 14863, complete genomehypothetical protein1e-1790.1
NC_007347:1:117721177212521750Ralstonia eutropha JMP134 chromosome 1, complete sequenceHNH endonuclease8e-1373.9
NC_007530:3462624:348605534860553486690636Bacillus anthracis str. 'Ames Ancestor', complete genomehypothetical protein3e-1272
NC_015576:1442713:144833114483311449320990Mycobacterium sp. JDM601 chromosome, complete genomeHNH endonuclease4e-1168.6
NC_004129:4434259:444774744477474448595849Pseudomonas fluorescens Pf-5, complete genomehypothetical protein2e-1065.9
NC_015379:6023926:603265360326536033618966Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein3e-1065.5
NC_009485:5171658:518387251838725184723852Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein1e-0963.9
NC_015957:336500:345618345618346355738Streptomyces violaceusniger Tu 4113 chromosome, complete genomeHNH endonuclease3e-0962
NC_012796:4075583:416030941603094161064756Desulfovibrio magneticus RS-1, complete genomehypothetical protein5e-0961.6
NC_010334:2131939:213883721388372139706870Shewanella halifaxensis HAW-EB4, complete genomerestriction endonuclease-like protein4e-0961.6
NC_009485:584707:592423592423593280858Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein3e-0858.9
NC_016002:1975000:198891019889101989800891Pseudogulbenkiania sp. NH8B, complete genomeHNH endonuclease5e-0858.5
NC_016582:6999074:701308770130877013824738Streptomyces bingchenggensis BCW-1 chromosome, complete genomeHNH endonuclease6e-0858.2
NC_008435:604772:626347626347627216870Rhodopseudomonas palustris BisA53, complete genomerestriction endonuclease-like protein1e-0757.4
NC_010002:3465509:347135734713573472349993Delftia acidovorans SPH-1, complete genomeHNH endonuclease1e-0653.9