Pre_GI Gene

Some Help

Host: NC_009512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:3618055 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
361805536192481194transcriptional regulator LysR familyQuickGO ontologyBLASTP
36194083620142735LmbE family proteinQuickGO ontologyBLASTP
362013936208557174-carboxy-4-hydroxy-2-oxoadipate aldolaseoxaloacetate decarboxylaseQuickGO ontologyBLASTP
362085836219431086protein of unknown function DUF453QuickGO ontologyBLASTP
36219673622425459hypothetical proteinBLASTP
36224963623056561GTP cyclohydrolase IQuickGO ontologyBLASTP
36230413623454414putative thiol-disulphide oxidoreductase DCCQuickGO ontologyBLASTP
36236033624379777hypothetical protein
36244363624714279hypothetical protein
36252003625442243hypothetical proteinBLASTP
36255943625857264hypothetical proteinBLASTP
36259183626472555GCN5-related N-acetyltransferaseQuickGO ontology
36265713627377807HNH endonucleaseQuickGO ontologyBLASTP
36277763628492717short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
36285383629023486hypothetical proteinBLASTP
362939036304271038diguanylate cyclaseQuickGO ontologyBLASTP
3630810363088677tRNA-ProQuickGO ontologyBLASTP
36310013631357357putative transcriptional regulator MerR familyQuickGO ontologyBLASTP
36313383631640303integration host factor alpha subunitQuickGO ontologyBLASTP
363164536340262382phenylalanyl-tRNA synthetase beta subunitQuickGO ontologyBLASTP
363405836350741017phenylalanyl-tRNA synthetase alpha subunitQuickGO ontologyBLASTP
36351843635540357ribosomal protein L20QuickGO ontologyBLASTP
36355683635762195ribosomal protein L35QuickGO ontologyBLASTP
36358233636374552translation initiation factor IF-3QuickGO ontologyBLASTP
363637436382961923threonyl-tRNA synthetaseQuickGO ontologyBLASTP