Pre_GI: BLASTP Hits

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Query: NC_015848:2859145:2876371 Mycobacterium canettii CIPT 140010059, complete genome

Start: 2876371, End: 2876796, Length: 426

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017026:2786000:280194328019432802368426Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein6e-55212
NC_000962:2791019:280831028083102808735426Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein6e-55212
NC_012207:2747599:276487927648792765304426Mycobacterium bovis BCG str. Tokyo 172, complete genomehypothetical protein6e-55212
NC_002945:2757821:277510727751072775532426Mycobacterium bovis AF2122/97, complete genomehypothetical protein6e-55212
NC_009525:2802987:282027828202782820703426Mycobacterium tuberculosis H37Ra, complete genomehypothetical protein6e-55212
NC_008769:2754828:277210627721062772531426Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomehypothetical protein6e-55212
NC_009565:2806000:282162828216282822053426Mycobacterium tuberculosis F11, complete genomehypothetical protein6e-55212
NC_019950:2830682:284790828479082848333426Mycobacterium canettii CIPT 140060008 complete genomehypothetical protein6e-55212
NC_016804:2735897:275147127514712751896426Mycobacterium bovis BCG str. Mexico chromosome, complete genomehypothetical protein6e-55212
NC_002755:2788000:280379828037982804223426Mycobacterium tuberculosis CDC1551, complete genomehypothetical protein9e-55211
NC_008782:3167440:319454231945423194970429Acidovorax sp. JS42, complete genomePIN domain family protein6e-1476.3
NC_015635:5511994:551795355179535518399447Microlunatus phosphovorus NM-1, complete genomehypothetical protein2e-1064.7
NC_008319:136863:142873142873143319447Synechococcus sp. CC9311, complete genomeMycobacterium tuberculosis PIN domain family subfamily2e-0754.7
NC_013169:2581500:258682725868272587270444Kytococcus sedentarius DSM 20547, complete genomepredicted nucleic acid-binding protein, contains PIN domain2e-0754.7