Pre_GI: BLASTP Hits

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Query: NC_013716:1178383:1186252 Citrobacter rodentium ICC168, complete genome

Start: 1186252, End: 1187898, Length: 1647

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013353:5090696:5108913510891351105621650Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector EspL-like protein0856
NC_013353:3627355:3636478363647836381271650Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector EspL0856
NC_011601:3338888:3348020334802033496691650Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector EspL-like protein0856
AP010958:5090696:5108913510891351105621650Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector EspL-like protein0856
AP010958:3627355:3636478363647836381271650Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector EspL-like protein0856
NC_013941:3676146:3685271368527136869201650Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeEnt protein0848
NC_013364:3701895:3710469371046937121181650Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector EspL0848
NC_002695:3852233:3861357386135738630061650Escherichia coli O157:H7 str. Sakai, complete genomeputative enterotoxin0847
NC_011353:3956630:3965754396575439674031650Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeEnt protein0847
NC_013008:3911356:3920480392048039221291650Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector0847
NC_002655:3919545:3928670392867039303191650Escherichia coli O157:H7 EDL933, complete genomeputative enterotoxin0845
NC_013364:5083949:5102092510209251031771086Escherichia coli O111:H- str. 11128, complete genome1e-157556
NC_012779:2619871:2625056262505626270562001Edwardsiella ictaluri 93-146, complete genomeOspD31e-73278
NC_013364:5083949:510152851015285101986459Escherichia coli O111:H- str. 11128, complete genome9e-63241