Pre_GI: BLASTP Hits

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Query: NC_013716:1178383:1185170 Citrobacter rodentium ICC168, complete genome

Start: 1185170, End: 1185379, Length: 210

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:1075535:1082546108254610837631218Shigella flexneri 2002017 chromosome, complete genomeputative P4-family integrase5e-32136
NC_002655:1448605:1454402145440214556041203Escherichia coli O157:H7 EDL933, complete genomeputative P4-family integrase5e-32136
NC_002655:1053082:1058795105879510599971203Escherichia coli O157:H7 EDL933, complete genomeputative P4-family integrase5e-32136
NC_002695:1364833:1370630137063013718321203Escherichia coli O157:H7 str. Sakai, complete genomeputative integrase5e-32136
NC_011353:1307106:1312903131290313141051203Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeintegrase5e-32136
NC_011601:1114104:1120326112032611215431218Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase5e-32136
NC_013008:1307392:1313189131318913143911203Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeP4-family integrase5e-32136
NC_013361:1284579:1291171129117112923731203Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase5e-32136
NC_013364:1257801:1264391126439112655931203Escherichia coli O111:H- str. 11128, complete genomeputative integrase5e-32136
NC_004431:1119700:1127702112770211289041203Escherichia coli CFT073, complete genomePutative P4-family integrase5e-32136
NC_007946:1073135:1081137108113710823391203Escherichia coli UTI89, complete genomeputative P4-family integrase7e-31132
NC_020541:2769419:2775362277536227765551194Rhodanobacter sp. 2APBS1, complete genomeIntegrase4e-23106
NC_016002:1048420:1057599105759910588101212Pseudogulbenkiania sp. NH8B, complete genomeP4 family integrase2e-1994.4
NC_015224:3587500:3594873359487335961561284Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative prophage integrase5e-0753.1
NC_002663:1988000:1994906199490619961591254Pasteurella multocida subsp. multocida str. Pm70, complete genomeSlpA8e-0752.4
NC_008800:1090000:1114774111477411160031230Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative prophage integrase9e-0752.4
NC_016860:2917910:292904129290412929637597Salmonella enterica subsp. enterica serovar Typhimurium strphage integrase family protein1e-0652
NC_016856:2896630:292570029257002926296597Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SP4-type integrase1e-0652
NC_016863:2844883:287395328739532874549597Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative integrase1e-0652
NC_016514:3573400:3580503358050335818131311Enterobacter cloacae EcWSU1 chromosome, complete genomeprophage CP4-57 integrase1e-0651.6
NC_013941:3300000:3313387331338733146161230Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage integrase family protein2e-0651.6
NC_010067:191190:2151992151992164701272Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0651.6
NC_020209:3874844:3880916388091638821751260Pseudomonas poae RE*1-1-14, complete genomeintegrase family protein2e-0651.6
NC_011094:2791719:2797034279703427983051272Salmonella enterica subsp. enterica serovar Schwarzengrund strphage integrase family protein2e-0651.2
NC_012947:1106000:1116151111615111173801230Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase3e-0650.8
NC_012967:2669182:2677417267741726786461230Escherichia coli B str. REL606 chromosome, complete genomeFels-2 prophage protein3e-0650.8
CP002185:2919752:2927054292705429282831230Escherichia coli W, complete genomeputative prophage integrase3e-0650.4
AP010958:3238742:3244745324474532459741230Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative integrase3e-0650.4
CP002516:1165726:1177574117757411788031230Escherichia coli KO11, complete genomeintegrase family protein3e-0650.4
NC_011415:3006794:3014953301495330161821230Escherichia coli SE11 chromosome, complete genomephage integrase3e-0650.4
NC_013353:3238742:3244745324474532459741230Escherichia coli O103:H2 str. 12009, complete genomeintegrase3e-0650.4
NC_013361:3651150:3659305365930536605341230Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase3e-0650.4
NC_016902:1165726:1177574117757411788031230Escherichia coli KO11FL chromosome, complete genomeintegrase family protein3e-0650.4
NC_009801:2898426:2906374290637429076841311Escherichia coli E24377A, complete genomephage integrase family protein3e-0650.4
NC_009792:3665369:3673469367346936747401272Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-0650.1