Pre_GI: BLASTP Hits

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Query: NC_013410:2179342:2189179 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2189179, End: 2192463, Length: 3285

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015578:2428500:2432809243280924359673159Treponema primitia ZAS-2 chromosome, complete genomeputative UvrD/REP helicase6e-61236
NC_021171:2562000:2569926256992625731923267Bacillus sp. 1NLA3E, complete genomeUvrD/REP helicase1e-46189
NC_015859:1069116:1089451108945110925733123Corynebacterium variabile DSM 44702 chromosome, complete genomeATP-dependent DNA helicase II6e-32140
NC_009621:389181:4008564008564040113156Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequenceUvrD/REP helicase4e-25117
NC_015425:369225:3726203726203763543735Clostridium botulinum BKT015925 chromosome, complete genomeATP-dependent nuclease subunit A3e-1998.2
NC_007604:1183497:1186081118608111892663186Synechococcus elongatus PCC 7942, complete genomehypothetical protein1e-1689.7
NC_018581:2768743:2778553277855327818073255Gordonia sp. KTR9 chromosome, complete genomeATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)4e-1687.8
NC_010725:3315007:3335885333588533390283144Methylobacterium populi BJ001, complete genomeUvrD/REP helicase1e-1586.7
NC_006576:414696:4315394315394347243186Synechococcus elongatus PCC 6301, complete genomehypothetical protein2e-1585.5
NC_016012:16134:1613416134197183585Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeATP-dependent deoxyribonuclease chain A2e-1379.3
NC_014729:1185294:1198980119898012024383459Halogeometricum borinquense DSM 11551 chromosome, complete genomeATP-dependent exonuclase v subunit beta, helicase and exonuclease domain-containing6e-1273.9
NC_009483:1551040:1564229156422915662652037Geobacter uraniireducens Rf4 chromosome, complete genomeUvrD/REP helicase7e-1273.9
NC_014926:795549:7955497955497984252877Thermovibrio ammonificans HB-1 chromosome, complete genomeUvrD/REP helicase2e-1172
NC_020210:2133996:2174276217427621763362061Geobacillus sp. GHH01, complete genomeDNA/RNA helicase3e-1171.6
NC_015428:2291430:2308080230808023118383759Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeATP-dependent helicase/nuclease subunit A7e-1170.5
NC_015508:296856:3134503134503166353186Agrobacterium sp. H13-3 chromosome linear, complete sequenceexodeoxyribonuclease V subunit beta8e-1170.5
NC_014614:260782:2675712675712711253555Clostridium sticklandii, complete genomeATP-dependent nuclease, subunit A1e-1070.1
NC_014365:2037506:2061168206116820646473480Desulfarculus baarsii DSM 2075 chromosome, complete genomeUvrD/REP helicase9e-1170.1
NC_009785:1443500:1456866145686614605163651Streptococcus gordonii str. Challis substr. CH1, complete genomefirst chain of major exonuclease RexA8e-1170.1
NC_015660:3518931:3562042356204235642342193Geobacillus thermoglucosidasius C56-YS93 chromosome, completeATP-dependent DNA helicase PcrA1e-1069.7
NC_018419:226000:2279972279972301502154Secondary endosymbiont of Ctenarytaina eucalypti chromosome,ATP-dependent DNA helicase UvrD4e-1067.8
NC_014720:4170:2938329383316532271Caldicellulosiruptor kronotskyensis 2002 chromosome, completeuvrd/rep helicase1e-0966.2
NC_010003:795355:8349168349168370362121Petrotoga mobilis SJ95, complete genomeUvrD/REP helicase2e-0965.9
NC_015519:2045935:2048474204847420513862913Tepidanaerobacter sp. Re1 chromosome, complete genomeUvrD/REP helicase2e-0965.5
NC_020388:1479568:1527842152784215316603819Natronomonas moolapensis 8.8.11 complete genomeUvrD/REP family helicase5e-0964.3
NC_018691:3496420:3492807349280734964303624Alcanivorax dieselolei B5 chromosome, complete genomeExodeoxyribonuclease V, beta subunit7e-0963.9
NC_020453:7826358:7826358782635878296753318Agromonas oligotrophica S58 DNA, complete genomeUvrD/REP helicase1e-0863.2
NC_012791:4794362:4820354482035448241453792Variovorax paradoxus S110 chromosome 1, complete genomeexodeoxyribonuclease V, beta subunit2e-0862
NC_019978:2293327:2307011230701123091222112Halobacteroides halobius DSM 5150, complete genomeATP-dependent DNA helicase PcrA3e-0862
NC_008752:2056547:2074331207433120767872457Acidovorax avenae subsp. citrulli AAC00-1, complete genomeUvrD/REP helicase3e-0861.6
NC_010655:1160384:1160384116038411623902007Akkermansia muciniphila ATCC BAA-835, complete genomeUvrD/REP helicase3e-0861.6
NC_010718:3039434:3039434303943430416982265Natranaerobius thermophilus JW/NM-WN-LF, complete genomeUvrD/REP helicase4e-0861.2
NC_014614:656000:6578816578816600432163Clostridium sticklandii, complete genomeATP-dependent DNA helicase6e-0860.8
NC_015571:2273503:2285868228586822890923225Porphyromonas gingivalis TDC60, complete genomeUvrD/REP helicase domain-containing protein6e-0860.5
NC_006270:718169:7181697181697203882220Bacillus licheniformis ATCC 14580, complete genomeATP-dependent DNA helicase7e-0860.5
NC_006322:717953:7179537179537201722220Bacillus licheniformis ATCC 14580, complete genomePcrA7e-0860.5
NC_008536:33776:4416344163474293267Solibacter usitatus Ellin6076, complete genomeUvrD/REP helicase8e-0860.5
NC_014500:2479814:2500330250033025040043675Dickeya dadantii 3937 chromosome, complete genomeexonuclease V (RecBCD complex), subunit beta1e-0759.7
NC_013316:1081044:1106579110657911104063828Clostridium difficile R20291, complete genomeATP-dependent nuclease subunit A1e-0759.7
NC_007645:713930:7350657350657372302166Hahella chejuensis KCTC 2396, complete genomeSuperfamily I DNA and RNA helicase2e-0758.9
NC_018515:3169973:3177608317760831798482241Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent DNA helicase PcrA3e-0758.5
NC_008781:2575213:2586714258671425901393426Polaromonas naphthalenivorans CJ2, complete genomeUvrD/REP helicase4e-0758.2
NC_009975:1712577:1739721173972117425612841Methanococcus maripaludis C6, complete genomeUvrD/REP helicase3e-0758.2
NC_018720:1186058:1186058118605811885712514Bifidobacterium asteroides PRL2011 chromosome, complete genomeATP-dependent DNA helicase PcrA6e-0757.4
NC_014973:243000:2582002582002603922193Geobacter sp. M18 chromosome, complete genomeUvrD/REP helicase7e-0757
NC_015978:1266196:1262475126247512662033729Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completeATP-dependent helicase/nuclease subunit A8e-0757
NC_014408:806720:8331098331098358652757Methanothermobacter marburgensis str. Marburg chromosome, completeATP-dependent DNA helicase9e-0757
NC_012796:2041579:2051898205189820537721875Desulfovibrio magneticus RS-1, complete genomeATP-dependent DNA helicase1e-0656.6
NC_003228:2973266:2979834297983429821942361Bacteroides fragilis NCTC 9343, complete genomeputative helicase1e-0656.6
NC_006347:2899653:2906221290622129085812361Bacteroides fragilis YCH46, complete genomeATP-dependent DNA helicase1e-0656.6
NC_016776:2956444:2997159299715929995192361Bacteroides fragilis 638R, complete genomeputative helicase1e-0656.6
NC_012796:4693500:4738098473809847399721875Desulfovibrio magneticus RS-1, complete genomeATP-dependent DNA helicase1e-0656.2
NC_007205:1:1382913829158652037Candidatus Pelagibacter ubique HTCC1062, complete genomeDNA helicase II2e-0655.8
NC_017347:2017097:2027227202722720294192193Staphylococcus aureus subsp. aureus T0131 chromosome, completeATP-dependent DNA helicase, PcrA2e-0655.8
NC_010278:398521:4207614207614243693609Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,exodeoxyribonuclease V subunit beta2e-0655.8
NC_012704:1747539:1749208174920817513252118Corynebacterium kroppenstedtii DSM 44385, complete genomeputative ATP-dependent DNA helicase II2e-0655.5
NC_009053:393700:4160344160344196423609Actinobacillus pleuropneumoniae L20, complete genomeexodeoxyribonuclease V beta chain3e-0655.5
NC_010379:73718:8792687926900192094Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequenceDNA helicase II3e-0655.1
NC_009012:3354477:3399024339902434012492226Clostridium thermocellum ATCC 27405, complete genomeATP-dependent DNA helicase PcrA3e-0655.1
NC_020388:1869000:1872073187207318755343462Natronomonas moolapensis 8.8.11 complete genomeUvrD/REP family helicase3e-0654.7
NC_015676:109743:1250711250711278602790Methanosalsum zhilinae DSM 4017 chromosome, complete genomeUvrD/REP helicase4e-0654.7
NC_019942:1078837:1093005109300510957792775Aciduliprofundum sp. MAR08-339, complete genomeDNA/RNA helicase, superfamily I5e-0654.3
NC_021171:358456:3625633625633647762214Bacillus sp. 1NLA3E, complete genomeATP-dependent DNA helicase6e-0654.3
NC_019978:1066000:1076331107633110794143084Halobacteroides halobius DSM 5150, complete genomeATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing6e-0654.3
NC_010939:405477:4438164438164474243609Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeexodeoxyribonuclease V beta chain6e-0653.9