Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:3241196:3291769 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 3291769, End: 3292785, Length: 1017

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014121:3235911:3241377324137732423931017Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeiron(III) ABC transporter, periplasmic iron(III)-binding protein4e-154544
NC_009921:6421387:6437373643737364384491077Frankia sp. EAN1pec, complete genomeextracellular solute-binding protein family 11e-94346
NC_017515:1601954:162297616229761623971996Neisseria meningitidis M04-240196 chromosome, complete genomeiron(III) ABC transporter periplasmic iron(III)-binding protein1e-51204
NC_017514:1568591:159323815932381594233996Neisseria meningitidis M01-240149 chromosome, complete genomeiron(III) ABC transporter periplasmic iron(III)-binding protein1e-51204
NC_014654:2277461:2283154228315422841671014Halanaerobium sp. 'sapolanicus' chromosome, complete genomeextracellular solute-binding protein family 18e-43174
NC_013946:2050871:205396320539632054949987Meiothermus ruber DSM 1279 chromosome, complete genomeextracellular solute-binding protein family 16e-40164
NC_007604:1442500:1460847146084714618691023Synechococcus elongatus PCC 7942, complete genomeiron transport system substrate-binding protein3e-36152
NC_015581:1891409:1911321191132119123551035Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeextracellular solute-binding protein family 11e-29130
NC_010175:398453:4152614152614163911131Chloroflexus aurantiacus J-10-fl, complete genomeextracellular solute-binding protein family 13e-27122
NC_012032:398419:4152274152274163571131Chloroflexus sp. Y-400-fl, complete genomeextracellular solute-binding protein family 13e-27122
NC_008820:1766973:1801124180112418021521029Prochlorococcus marinus str. MIT 9303, complete genomehypothetical protein2e-25117
NC_005071:288922:3258733258733269011029Prochlorococcus marinus str. MIT 9313, complete genomeputative iron ABC transporter, substrate binding protein1e-25117
NC_007513:1900000:190792319079231908921999Synechococcus sp. CC9902, complete genomeputative iron ABC transporter, substrate binding protein1e-25117
NC_018643:807405:8090758090758100911017Alpha proteobacterium HIMB5 chromosome, complete genomeextracellular solute-binding protein2e-25116
NC_013173:815696:8184298184298194301002Desulfomicrobium baculatum DSM 4028, complete genomeextracellular solute-binding protein family 19e-25114
NC_007516:1439537:1448661144866114496651005Synechococcus sp. CC9605, complete genomeputative iron ABC transporter, substrate binding protein2e-24113
NC_019964:2680935:2698446269844626995731128Halovivax ruber XH-70, complete genomeABC-type Fe3+ transport system, periplasmic component5e-22105
NC_009633:4733678:4744609474460947456881080Alkaliphilus metalliredigens QYMF chromosome, complete genomeextracellular solute-binding protein2e-21103
NC_013421:3237633:3250852325085232518981047Pectobacterium wasabiae WPP163, complete genomeextracellular solute-binding protein family 16e-2098.6
NC_009481:1638394:1658213165821316592561044Synechococcus sp. WH 7803 chromosome, complete genomeFe3+ ABC transporter periplasmic protein8e-2098.2
NC_007643:889755:9072239072239082661044Rhodospirillum rubrum ATCC 11170, complete genomeextracellular solute-binding protein, family 16e-1995.1
NC_014910:1591003:1605339160533916063881050Alicycliphilus denitrificans BC chromosome, complete genomeextracellular solute-binding protein family 12e-1893.6
NC_015422:3413386:3418761341876134198101050Alicycliphilus denitrificans K601 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1893.6
NC_014166:2649444:2664773266477326657801008Arcobacter nitrofigilis DSM 7299 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1893.6
NC_020418:1397112:1403661140366114047071047Morganella morganii subsp. morganii KT, complete genomeFerric iron ABC transporter, iron-binding protein4e-1892.4
NC_019940:1932906:195125019512501952245996Thioflavicoccus mobilis 8321 chromosome, complete genomeFe3+ ABC transporter substrate-binding protein2e-1790.5
NC_014634:28690:3036830368314261059Ilyobacter polytropus DSM 2926 plasmid pILYOP02, complete sequenceextracellular solute-binding protein family 11e-1687.8
NC_017027:1329708:1351202135120213522151014Pasteurella multocida subsp. multocida str. HN06 chromosome,periplasmic iron-binding protein1e-1480.9
NC_011566:4309151:4311960431196043129671008Shewanella piezotolerans WP3, complete genomeExtracellular solute-binding protein, family 11e-1274.3
NC_014364:1990000:2000764200076420018251062Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 12e-1273.2
NC_010723:371741:3877433877433887921050Clostridium botulinum E3 str. Alaska E43, complete genomeABC transporter, substrate-binding protein3e-1066.2
NC_015572:4576778:458515145851514586149999Methylomonas methanica MC09 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-1065.9
NC_012563:1348500:1363689136368913647351047Clostridium botulinum A2 str. Kyoto, complete genomeABC transporter, substrate-binding protein5e-1065.5
NC_015680:930483:9469259469259479681044Pyrococcus yayanosii CH1 chromosome, complete genomethiamine-binding periplasmic protein2e-0963.9
NC_010674:370629:3923483923483933851038Clostridium botulinum B str. Eklund 17B, complete genomeABC transporter, substrate-binding protein2e-0963.9
NC_015376:965000:9682399682399692551017Burkholderia gladioli BSR3 chromosome chromosome 2, completeextracellular solute-binding family protein 159e-0961.2
NC_014122:967194:9842959842959853201026Methanocaldococcus infernus ME chromosome, complete genomeextracellular solute-binding protein family 13e-0859.7
NC_013446:4723380:4749627474962747506761050Comamonas testosteroni CNB-2, complete genomeperiplasmic iron binding protein3e-0859.7
NC_014153:2187409:219158521915852192571987Thiomonas intermedia K12 chromosome, complete genomeextracellular solute-binding protein family 13e-0756.2
NC_011000:1216430:1220139122013912211671029Burkholderia cenocepacia J2315 chromosome 1, complete sequenceextracellular solute-binding protein7e-0755.1
NC_013946:415028:4411734411734422551083Meiothermus ruber DSM 1279 chromosome, complete genomeABC transporter periplasmic binding protein, thiB subfamily1e-0654.3
NC_015381:1318818:1321712132171213227671056Burkholderia gladioli BSR3 chromosome 1, complete sequenceextracellular solute-binding protein2e-0653.9
NC_017297:1280963:129455712945571295387831Clostridium botulinum F str. 230613 chromosome, complete genomeABC transporter substrate-binding protein3e-0653.1
NC_006177:2943259:2964845296484529659421098Symbiobacterium thermophilum IAM 14863, complete genomeiron ABC transporter substrate-binding protein2e-0653.1
NC_013315:3214063:3218106321810632192271122Clostridium difficile CD196 chromosome, complete genomeABC transporter substrate-binding protein4e-0652.4
NC_017179:3222015:3226058322605832271071050Clostridium difficile BI1, complete genomeABC transporter substrate-binding protein5e-0652.4
NC_018644:137755:1649331649331659371005Alpha proteobacterium HIMB59 chromosome, complete genomeextracellular solute-binding protein6e-0652
NC_012962:869295:8692958692958703261032Photorhabdus asymbiotica, complete genomeperiplasmic ferric iron-binding protein (putative periplasmic-iron binding protein)6e-0652
NC_008262:67711:8062880628816921065Clostridium perfringens SM101, complete genomeBacterial extracellular solute-binding protein domain protein7e-0652