Pre_GI: BLASTP Hits

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Query: NC_012811:62867:72260 Methylobacterium extorquens AM1 megaplasmid, complete sequence

Start: 72260, End: 72817, Length: 558

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011894:6708970:6710443671044367124251983Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase9e-37152
NC_012988:4075429:4091338409133840933351998Methylobacterium extorquens DM4, complete genomesensor hybrid histidine kinase with multiple PAS and response regulator receiver domains1e-34145
NC_012808:3711806:3728812372881237304761665Methylobacterium extorquens AM1, complete genome2e-34145
NC_010172:3712000:3725376372537637274122037Methylobacterium extorquens PA1, complete genomePAS sensor protein4e-34144
NC_012988:1817000:1843203184320318447081506Methylobacterium extorquens DM4, complete genomehybrid histidine kinase3e-23108
NC_017249:7917586:7926765792676579284471683Bradyrhizobium japonicum USDA 6, complete genometwo-component hybrid sensor and regulator4e-23107
NC_004463:2344128:2353736235373623554181683Bradyrhizobium japonicum USDA 110, complete genometwo-component hybrid sensor and regulator4e-23107
NC_016626:1669477:1672272167227216739901719Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative sensor histidine kinase/response regulator5e-21100
NC_020304:129321:1431241431241457452622Desulfocapsa sulfexigens DSM 10523, complete genomePAS domain S-box2e-1582.4
NC_013093:2599591:2617931261793126195711641Actinosynnema mirum DSM 43827, complete genomePAS/PAC sensor hybrid histidine kinase2e-1272
NC_014972:2771902:2776933277693327799383006Desulfobulbus propionicus DSM 2032 chromosome, complete genomemulti-sensor hybrid histidine kinase3e-1271.2
NC_011894:6259649:6272210627221062742312022Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase1e-1169.7
NC_014924:2399524:2397876239787623995371662Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomehistidine kinase1e-1169.3
NC_011071:1178423:1178423117842311804922070Stenotrophomonas maltophilia R551-3, complete genomePAS/PAC sensor hybrid histidine kinase2e-1168.9
NC_010172:480000:4827384827384864153678Methylobacterium extorquens PA1, complete genomePAS sensor protein2e-1168.9
NC_011757:39881:6236162361648742514Methylobacterium chloromethanicum CM4, complete genomemulti-sensor hybrid histidine kinase5e-1167.4
NC_010511:5169338:5182175518217551842262052Methylobacterium sp. 4-46 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase1e-1065.9
NC_011757:517000:5364535364535397223270Methylobacterium chloromethanicum CM4, complete genomemulti-sensor hybrid histidine kinase2e-1065.5
NC_014972:1982315:2005012200501220078552844Desulfobulbus propionicus DSM 2032 chromosome, complete genomemulti-sensor hybrid histidine kinase3e-1064.7
NC_020209:1903830:1920733192073319224031671Pseudomonas poae RE*1-1-14, complete genomeputative two-component sensor histidine kinase3e-1064.7
NC_006138:2683545:2730148273014827330392892Desulfotalea psychrophila LSv54, complete genometwo-component system sensory/regulatory protein (Ntr family)4e-1064.3
NC_012108:4417483:4431023443102344335002478Desulfobacterium autotrophicum HRM2, complete genometwo-component sensory box histidine kinase/response regulator4e-1064.3
NC_017249:2073558:2073998207399820757671770Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein5e-1064.3
NC_010505:5525461:5554984555498455578242841Methylobacterium radiotolerans JCM 2831, complete genomemulti-sensor hybrid histidine kinase5e-1064.3
NC_011146:3376816:3393758339375833975973840Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase8e-1063.5
NC_011027:1427343:1436693143669314408864194Chlorobaculum parvum NCIB 8327, complete genomemulti-sensor hybrid histidine kinase7e-1063.5
NC_012918:1660477:1683690168369016861222433Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase6e-1063.5
NC_004463:2344128:2350024235002423519281905Bradyrhizobium japonicum USDA 110, complete genometwo-component hybrid sensor and regulator9e-1063.2
NC_010725:4035397:4040090404009040425132424Methylobacterium populi BJ001, complete genomemulti-sensor hybrid histidine kinase1e-0963.2
NC_017249:7917586:7930165793016579321591995Bradyrhizobium japonicum USDA 6, complete genometwo-component hybrid sensor and regulator1e-0963.2
NC_018645:4879931:4900050490005049038533804Desulfobacula toluolica Tol2, complete genometwo component system sensor histidine kinase, hybrid2e-0962
NC_010505:5525461:5540340554034055425082169Methylobacterium radiotolerans JCM 2831, complete genomeintegral membrane sensor hybrid histidine kinase3e-0961.2
NC_011757:5048714:5074765507476550768222058Methylobacterium chloromethanicum CM4, complete genomehistidine kinase5e-0960.8
NC_015740:3678342:371320437132043713704501Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein6e-0960.5
NC_011146:482440:5050885050885079552868Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase6e-0960.5
NC_011757:4293000:4334529433452943362501722Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase8e-0960.1
NC_008536:9538891:954719895471989547563366Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver protein1e-0859.7
NC_010172:798923:8172928172928189051614Methylobacterium extorquens PA1, complete genomeATP-binding region ATPase domain protein1e-0859.7
NC_011769:3434744:3455132345513234581553024Desulfovibrio vulgaris str. 'Miyazaki F', complete genomePAS/PAC sensor hybrid histidine kinase1e-0859.7
NC_011757:3540992:3552751355275135544931743Methylobacterium chloromethanicum CM4, complete genomehistidine kinase1e-0859.7
NC_014365:2888897:2908495290849529110112517Desulfarculus baarsii DSM 2075 chromosome, complete genomesignal transduction histidine kinase, nitrogen specific, NtrB9e-0959.7
NC_010505:5525461:5537500553750055396112112Methylobacterium radiotolerans JCM 2831, complete genomePAS/PAC sensor hybrid histidine kinase1e-0859.3
NC_011894:3623500:3624775362477536267631989Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase1e-0859.3
NC_011757:39881:4793747937503692433Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase1e-0859.3
NC_011757:3486283:3521250352125035240782829Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase2e-0859.3
NC_008554:2308500:2324965232496523268241860Syntrophobacter fumaroxidans MPOB, complete genomeintegral membrane sensor hybrid histidine kinase2e-0858.9
NC_020304:129321:1457451457451478982154Desulfocapsa sulfexigens DSM 10523, complete genomePAS domain S-box2e-0858.9
NC_013223:1090397:1100795110079511030052211Desulfohalobium retbaense DSM 5692, complete genomePAS/PAC sensor hybrid histidine kinase2e-0858.5
NC_017249:4365935:4380207438020743825702364Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein3e-0858.5
NC_011146:2485625:2485625248562524894073783Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase3e-0858.5
NC_012918:1814000:1823304182330418264473144Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase4e-0857.8
NC_007951:2045830:2054351205435120567202370Burkholderia xenovorans LB400 chromosome 1, complete sequencePAS/PAC Sensor Hybrid Histidine Kinase4e-0857.8
NC_014006:611592:6125216125216145842064Sphingobium japonicum UT26S chromosome 1, complete genomesignal transduction histidine kinase5e-0857.4
NC_010511:3160123:3164569316456931677423174Methylobacterium sp. 4-46 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase5e-0857.4
NC_002939:2617037:2634831263483126378783048Geobacter sulfurreducens PCA, complete genomesensory box histidine kinase/response regulator5e-0857.4
NC_007512:944941:9678019678019698972097Pelodictyon luteolum DSM 273, complete genomePAS/PAC sensor hybrid histidine kinase8e-0857
NC_020304:1097478:1111644111164411139682325Desulfocapsa sulfexigens DSM 10523, complete genomePAS domain S-box8e-0857
NC_006833:902744:9236259236259261052481Wolbachia endosymbiont strain TRS of Brugia malayi, completeMembrane associated signal transduction histidine kinase and receiver domain9e-0856.6
NC_016010:1822212:1902046190204619041182073Xanthomonas axonopodis pv. citrumelo F1 chromosome, completehistidine kinase-response regulator hybrid protein1e-0756.2
NC_011146:3089297:3089297308929730924403144Geobacter bemidjiensis Bem, complete genomePAS/PAC sensor hybrid histidine kinase1e-0755.8
NC_013941:5013695:5015233501523350175902358Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeIntegral membrane sensor hybrid histidine kinase2e-0755.5
NC_002655:5194804:5196438519643851987082271Escherichia coli O157:H7 EDL933, complete genomeputative histidine kinase2e-0755.5
NC_002695:5164819:5166453516645351687232271Escherichia coli O157:H7 str. Sakai, complete genomeputative histidine protein kinase2e-0755.5
NC_011353:5240020:5241654524165452439242271Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-0755.5
NC_013008:5196080:5197714519771451999842271Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehistidine kinase2e-0755.5
NC_020209:1903830:191001719100171910394378Pseudomonas poae RE*1-1-14, complete genomeresponse regulator2e-0755.5
NC_007606:3842708:3859899385989938621632265Shigella dysenteriae Sd197, complete genomeputative histidine kinase2e-0755.5
NC_010172:798923:8596738596738628703198Methylobacterium extorquens PA1, complete genomePAS sensor protein2e-0755.5
NC_012988:769981:8362228362228394193198Methylobacterium extorquens DM4, complete genomesensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains2e-0755.5
NC_012918:1444333:1471010147101014736192610Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase2e-0755.5
NC_007761:3047321:305125730512573051790534Rhizobium etli CFN 42, complete genomeprobable two-component response regulator protein3e-0755.1
NC_014924:2517068:2518503251850325204191917Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase3e-0755.1
NC_012988:347500:348595348595348990396Methylobacterium extorquens DM4, complete genomeresponse regulator3e-0755.1
NC_011757:3486283:3524427352442735276243198Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase3e-0754.7
NC_015690:3941113:4009017400901740106211605Paenibacillus mucilaginosus KNP414 chromosome, complete genomeYesN133e-0754.7
NC_016935:1365463:1428425142842514300291605Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein3e-0754.7
NC_020209:2838582:2838582283858228424063825Pseudomonas poae RE*1-1-14, complete genomesensor histidine kinase4e-0754.7
NC_014972:1923035:1935850193585019381862337Desulfobulbus propionicus DSM 2032 chromosome, complete genomemulti-sensor hybrid histidine kinase5e-0754.3
NC_011757:5742290:5768649576864957713212673Methylobacterium chloromethanicum CM4, complete genomemulti-sensor hybrid histidine kinase5e-0753.9
NC_014844:1270618:1295778129577812976941917Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeresponse regulator receiver5e-0753.9
NC_011146:3426500:3428824342882434314332610Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase6e-0753.9
NC_009952:1680682:1705935170593517082742340Dinoroseobacter shibae DFL 12, complete genomehistidine kinase6e-0753.9
NC_009434:2577717:258359925835992584000402Pseudomonas stutzeri A1501, complete genomeresponse regulator6e-0753.9
NC_007434:1001514:1002987100298710047951809Burkholderia pseudomallei 1710b chromosome I, complete sequenceputative two-component regulator histidine sensor kinase1e-0652.8
NC_006350:845513:8455138455138473211809Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative two-component regulator histidine sensor kinase1e-0652.8
NC_010814:1390817:1412795141279514141831389Geobacter lovleyi SZ, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family1e-0652.8
NC_013223:1349000:1352416135241613546922277Desulfohalobium retbaense DSM 5692, complete genomePAS/PAC sensor hybrid histidine kinase1e-0652.8
NC_017030:4062699:4084425408442540859541530Corallococcus coralloides DSM 2259 chromosome, complete genomesensor histidine kinase/response regulator2e-0652.4
NC_010505:5525461:5552538555253855544541917Methylobacterium radiotolerans JCM 2831, complete genomehistidine kinase2e-0652
NC_007626:3522265:3595421359542135977692349Magnetospirillum magneticum AMB-1, complete genomeSignal transduction histidine kinase2e-0651.6
NC_015376:3249773:3264864326486432672962433Burkholderia gladioli BSR3 chromosome chromosome 2, completesensory box sensor histidine kinase/response regulator4e-0651.2
NC_008095:5527707:5527707552770755292601554Myxococcus xanthus DK 1622, complete genomesensor histidine kinase/response rgulator4e-0651.2
NC_020126:6344827:6344827634482763463501524Myxococcus stipitatus DSM 14675, complete genomesensor histidine kinase/response rgulator4e-0651.2
NC_014206:1694330:172848917284891729271783Geobacillus sp. C56-T3 chromosome, complete genomeAraC family transcriptional regulator4e-0651.2
NC_016803:198178:1981781981781995811404Desulfovibrio desulfuricans ND132 chromosome, complete genometwo component Fis family sigma54-specific transcriptional regulator4e-0651.2
NC_010501:1868888:1868888186888818701261239Pseudomonas putida W619, complete genomeresponse regulator receiver modulated serine phosphatase3e-0651.2
NC_010505:3376322:3394677339467733967672091Methylobacterium radiotolerans JCM 2831, complete genomePAS/PAC sensor hybrid histidine kinase5e-0650.8
NC_015563:3511951:3533202353320235356942493Delftia sp. Cs1-4 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase5e-0650.8
NC_015711:7471500:7471562747156274729531392Myxococcus fulvus HW-1 chromosome, complete genomesensor histidine kinase/response rgulator5e-0650.8
NC_011027:817311:8281228281228305182397Chlorobaculum parvum NCIB 8327, complete genomemulti-sensor hybrid histidine kinase6e-0650.4
NC_012483:483425:500474500474501130657Acidobacterium capsulatum ATCC 51196, complete genomeDNA-binding response regulator FixJ6e-0650.4
NC_011757:5102732:5106163510616351085412379Methylobacterium chloromethanicum CM4, complete genomeresponse regulator receiver protein7e-0650.4
NC_010002:4038500:4038892403889240418312940Delftia acidovorans SPH-1, complete genomePAS/PAC sensor hybrid histidine kinase8e-0650.1