Pre_GI: BLASTP Hits

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Query: NC_012811:1105395:1128509 Methylobacterium extorquens AM1 megaplasmid, complete sequence

Start: 1128509, End: 1129255, Length: 747

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010505:5077162:508577750857775086580804Methylobacterium radiotolerans JCM 2831, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-85316
NC_012808:1220378:126495612649561265777822Methylobacterium extorquens AM1, complete genomehypothetical protein4e-60231
NC_012988:670101:689280689280690128849Methylobacterium extorquens DM4, complete genomehypothetical protein8e-59226
NC_010511:4696868:470105347010534701763711Methylobacterium sp. 4-46 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-44179
NC_010172:3946644:396958839695883970361774Methylobacterium extorquens PA1, complete genomeErfK/YbiS/YcfS/YnhG family protein5e-43174
NC_012988:4353000:437534843753484376079732Methylobacterium extorquens DM4, complete genomehypothetical protein8e-43173
NC_014923:1249267:126104712610471261634588Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete8e-41167
NC_011894:200928:204335204335205126792Methylobacterium nodulans ORS 2060, complete genomeErfK/YbiS/YcfS/YnhG family protein6e-40164
NC_011146:4505821:4525715452571545269441230Geobacter bemidjiensis Bem, complete genomeErfK/YbiS/YcfS/YnhG family protein5e-1581.6
NC_012918:4648220:4661097466109746623261230Geobacter sp. M21 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein3e-1479
NC_002971:1523065:152555015255501526494945Coxiella burnetii RSA 493, complete genomeLysM domain protein1e-1376.6
NC_013353:922937:929353929353930273921Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-1375.9
AP010958:922937:929353929353930273921Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein3e-1375.9
NC_013364:928486:934902934902935822921Escherichia coli O111:H- str. 11128, complete genomehypothetical protein3e-1375.5
NC_016822:2201388:224050722405072241439933Shigella sonnei 53G, complete genomeL,D-transpeptidase1e-1273.9
AP010958:2455052:245747824574782458410933Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved hypothetical protein ErfK9e-1373.9
NC_013353:2455052:245747824574782458410933Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein9e-1373.9
NC_009800:2083465:210099321009932101925933Escherichia coli HS, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-1273.6
NC_010468:1816359:181880018188001819723924Escherichia coli ATCC 8739, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-1273.6
NC_009483:2489000:2517302251730225186211320Geobacter uraniireducens Rf4 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-1273.6
NC_012947:1769438:177133417713341772269936Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-1273.6
AC_000091:2027648:206452820645282065460933Escherichia coli W3110 DNA, complete genomeconserved hypothetical protein with NAD(P)-binding Rossmann-fold domain1e-1273.6
NC_000913:2042935:206041520604152061347933Escherichia coli K12, complete genomeconserved protein with NAD(P)-binding Rossmann-fold domain1e-1273.6
NC_010473:2119480:215142321514232152355933Escherichia coli str. K-12 substr. DH10B, complete genomeconserved protein with NAD(P)-binding Rossmann-fold domain1e-1273.6
NC_011745:2209288:226943222694322270364933Escherichia coli ED1a chromosome, complete genomehypothetical protein1e-1273.6
NC_012759:1920955:195289819528981953830933Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-1273.6
NC_012967:1967675:200039120003912001323933Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-1273.6
NC_011601:2139188:217742621774262178358933Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein1e-1273.6
NC_007946:2155454:216844421684442169379936Escherichia coli UTI89, complete genomehypothetical protein2e-1272.8
NC_004431:2304280:231727923172792318214936Escherichia coli CFT073, complete genomeProtein erfK/srfK precursor2e-1272.8
NC_008253:2056734:206975620697562070691936Escherichia coli 536, complete genomeprotein ErfK/SrfK precursor2e-1272.8
CP002797:2062006:206338120633812064313933Escherichia coli NA114, complete genomehypothetical protein2e-1272.8
NC_021066:601029:605224605224606165942Raoultella ornithinolytica B6, complete genomeL,D-transpeptidase2e-1169.3
NC_007712:1712667:1730410173041017315371128Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-1168.9
NC_016612:5296076:531862453186245319565942Klebsiella oxytoca KCTC 1686 chromosome, complete genomeL,D-transpeptidase4e-1168.6
NC_012917:2786283:2804764280476428057861023Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeErfK/YbiS/YcfS/YnhG family protein7e-1167.8
NC_013421:2972269:3005361300536130063831023Pectobacterium wasabiae WPP163, complete genomeErfK/YbiS/YcfS/YnhG family protein7e-1167.8
NC_015663:4906652:492354349235434924484942Enterobacter aerogenes KCTC 2190 chromosome, complete genomeL,D-transpeptidase1e-1067
NC_011094:2061000:207582520758252076754930Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-1065.5
NC_011149:2040396:205413720541372055066930Salmonella enterica subsp. enterica serovar Agona str. SL483,protein ErfK/srfK3e-1065.5
NC_008570:4009762:4024593402459340256271035Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeLysM domain protein3e-1065.5
NC_009348:3819271:383658138365813837507927Aeromonas salmonicida subsp. salmonicida A449, complete genomepeptidoglycan-binding LysM5e-1064.7
NC_007484:755058:775264775264776262999Nitrosococcus oceani ATCC 19707, complete genomehypothetical protein8e-1063.9
NC_011283:1811000:188336118833611884296936Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein1e-0963.9
NC_016832:948029:949926949926950855930Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,L,D-transpeptidase ErfK/SrfK2e-0963.2
NC_004631:948054:949972949972950901930Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-0963.2
NC_011901:1860887:1859616185961618608901275Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein2e-0962.8
NC_013411:284461:317145317145317651507Geobacillus sp. Y412MC61, complete genomeErfK/YbiS/YcfS/YnhG family protein7e-0960.8
NC_015565:2027279:207794920779492078833885Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeErfK/YbiS/YcfS/YnhG family protein9e-0960.8
NC_020063:2077233:208972220897222090687966Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein3e-0859.3
NC_006510:3321426:332186033218603322357498Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-0858.9
NC_013791:2839516:284500328450032845497495Bacillus pseudofirmus OF4 chromosome, complete genomeUncharacterized erfK/srfK family protein, probably secreted6e-0858.2
NC_012793:3243727:325708732570873257584498Geobacillus sp. WCH70, complete genomeErfK/YbiS/YcfS/YnhG family protein8e-0857.8
NC_021171:1661923:166412816641281664484357Bacillus sp. 1NLA3E, complete genomeErfK/YbiS/YcfS/YnhG family protein2e-0756.2
NC_015589:2878000:289307328930732893954882Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein2e-0756.2
NC_020210:3341976:334737533473753347872498Geobacillus sp. GHH01, complete genomeputative L,D-transpeptidase Ldt5e-0755.1
NC_000964:1474451:147581914758191476313495Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein5e-0755.1
NC_009348:1347500:135138913513891352306918Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein5e-0755.1
NC_019896:2579036:259286725928672593370504Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSpore protein YkuD5e-0754.7
NC_021182:1188000:119687011968701197244375Clostridium pasteurianum BC1, complete genomehypothetical protein5e-0754.7
NC_008319:1574908:157605115760511576644594Synechococcus sp. CC9311, complete genomeATP synthase7e-0754.3
NC_013406:2207520:221306922130692213377309Paenibacillus sp. Y412MC10 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein8e-0754.3