Pre_GI: BLASTP Hits

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Query: NC_010660:86445:106521 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 106521, End: 108263, Length: 1743

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2819128:2843650284365028454311782Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity island 1 effector protein1e-78294
NC_010067:84093:8409384093858771785Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-76288
NC_006905:2960260:2982642298264229844231782Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein2e-76286
NC_016856:3026426:3049351304935130511321782Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stranslocation machinery component8e-76285
NC_016831:2867766:2891038289103828928191782Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity island 1 effector protein8e-76285
NC_016810:3028421:3051690305169030534711782Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity island 1 effector protein8e-76285
NC_012125:2938519:2963025296302529648061782Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity island 1 effector protein8e-76285
NC_011294:2890500:2913774291377429155551782Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island 1 effector protein8e-76285
NC_011205:3050235:3073511307351130752921782Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853cell invasion protein SipB8e-76285
NC_003197:3005842:3029114302911430308951782Salmonella typhimurium LT2, complete genometranslocation machinery component8e-76285
NC_010102:2967464:2992096299209629938771782Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-76285
NC_016857:3028421:3051690305169030534711782Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74cell invasion protein8e-76285
NC_016860:3029272:3052544305254430543251782Salmonella enterica subsp. enterica serovar Typhimurium strcell invasion protein8e-76285
NC_016863:2974333:2997604299760429993851782Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1translocation machinery component8e-76285
NC_011147:2814664:2839186283918628409671782Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein7e-76285
NC_016832:2829767:2854270285427028560511782Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cell invasion protein sipB8e-76285
NC_011094:2913500:2936310293631029380911782Salmonella enterica subsp. enterica serovar Schwarzengrund strcell invasion protein SipB8e-76285
NC_003198:2856596:2881114288111428828951782Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity island 1 effector protein8e-76285
NC_011080:2982346:3005618300561830073991782Salmonella enterica subsp. enterica serovar Newport str. SL254,cell invasion protein SipB8e-76285
NC_011149:2912219:2937640293764029394211782Salmonella enterica subsp. enterica serovar Agona str. SL483,cell invasion protein SipB8e-76285
NC_004631:2842453:2866971286697128687521782Salmonella enterica subsp. enterica serovar Typhi Ty2, completepathogenicity island 1 effector protein8e-76285
NC_017046:3027161:3050430305043030522111782Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island 1 effector protein8e-76285
NC_011274:2881306:2904578290457829063591782Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island 1 effector protein1e-75284
NC_015761:2726000:2748713274871327504941782Salmonella bongori NCTC 12419, complete genomepathogenicity island 1 effector protein3e-74279
NC_013971:2876733:2893173289317328951912019Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein3e-21103
NC_013961:851044:8761098761098781272019Erwinia amylovora, complete genomeCell invasion protein sipB3e-21103
NC_010694:2138000:2150656215065621525661911Erwinia tasmaniensis, complete genomeCell invasion protein7e-21102
NC_013971:1660144:1688661168866116905621902Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein9e-2099
NC_013961:1622616:1651134165113416530351902Erwinia amylovora, complete genomeCell invasion protein SipB9e-2099
NC_013722:1689125:1727804172780417294081605Xanthomonas albilineans, complete genomeprobable xsa-invasion protein3e-1480.5
NC_010694:2971170:2987167298716729890531887Erwinia tasmaniensis, complete genomePutative Invasin-like protein (62 kDa antigen)7e-1479.3
NC_012214:2221702:2238081223808122399821902Erwinia pyrifoliae Ep1/96, complete genomeCell invasion protein SipB1e-1379
NC_011751:4293966:4302126430212643039071782Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-0862
NC_011750:4390000:4420346442034644221271782Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-0861.2