Pre_GI: BLASTP Hits

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Query: NC_010660:86445:105410 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 105410, End: 106501, Length: 1092

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:2867766:2889781288978128910101230Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity island 1 effector protein5e-28125
NC_011274:2881306:2903321290332129045501230Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island 1 effector protein6e-25115
NC_011205:3050235:3072254307225430734831230Salmonella enterica subsp. enterica serovar Dublin str. CT_020218536e-25115
NC_011094:2913500:2935053293505329362821230Salmonella enterica subsp. enterica serovar Schwarzengrund strcell invasion protein SipC6e-25115
NC_011080:2982346:3004361300436130055901230Salmonella enterica subsp. enterica serovar Newport str. SL254,6e-25115
NC_006905:2960260:2981385298138529826141230Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein6e-25115
NC_003197:3005842:3027857302785730290861230Salmonella typhimurium LT2, complete genometranslocation machinery component6e-25115
NC_010102:2967464:2990839299083929920681230Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-25115
NC_011149:2912219:2936383293638329376121230Salmonella enterica subsp. enterica serovar Agona str. SL483,7e-25115
NC_011294:2890500:2912517291251729137461230Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island 1 effector protein6e-25115
NC_016810:3028421:3050433305043330516621230Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity island 1 effector protein6e-25115
NC_015761:2726000:2747456274745627486851230Salmonella bongori NCTC 12419, complete genomepathogenicity island 1 effector protein4e-25115
NC_010067:84093:8590485904871331230Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-25115
NC_012125:2938519:2961768296176829629971230Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity island 1 effector protein6e-25115
NC_017046:3027161:3049173304917330504021230Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island 1 effector protein6e-25115
NC_016863:2974333:2996347299634729975761230Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1translocation machinery component6e-25115
NC_016860:3029272:3051287305128730525161230Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity 1 island effector protein6e-25115
NC_016857:3028421:3050433305043330516621230Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74translocation machinery component6e-25115
NC_016856:3026426:3048094304809430493231230Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stranslocation machinery component6e-25115
NC_011147:2814664:2837929283792928391581230Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein5e-24112
NC_006511:2819128:2842393284239328436221230Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity island 1 effector protein5e-24112
NC_016832:2829767:2853013285301328542421230Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cell invasion protein sipC1e-23111
NC_004631:2842453:2865714286571428669431230Salmonella enterica subsp. enterica serovar Typhi Ty2, completepathogenicity island 1 effector protein1e-23111
NC_003198:2856596:2879857287985728810861230Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity island 1 effector protein1e-23111