Pre_GI: BLASTP Hits

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Query: NC_010660:86445:104361 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 104361, End: 105359, Length: 999

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2960260:2980283298028329813141032Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein4e-50198
NC_011080:2982346:3003259300325930042901032Salmonella enterica subsp. enterica serovar Newport str. SL254,5e-50198
NC_011205:3050235:3071152307115230721831032Salmonella enterica subsp. enterica serovar Dublin str. CT_020218535e-50198
NC_011274:2881306:2902219290221929032501032Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island 1 effector protein5e-50198
NC_011294:2890500:2911415291141529124461032Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island 1 effector protein5e-50198
NC_012125:2938519:2960666296066629616971032Salmonella enterica subsp. enterica serovar Paratyphi C straincell invasion protein5e-50198
NC_016831:2867766:2888679288867928897101032Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity island 1 effector protein5e-50198
NC_011094:2913500:2933960293396029349821023Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III effector protein IpaD/SipD/SspD9e-50197
NC_015761:2726000:2746363274636327473851023Salmonella bongori NCTC 12419, complete genomepathogenicity island 1 effector protein8e-50197
NC_003197:3005842:3026755302675530277861032Salmonella typhimurium LT2, complete genometranslocation machinery component7e-50197
NC_016810:3028421:3049331304933130503621032Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity island 1 effector protein7e-50197
NC_016856:3026426:3046992304699230480231032Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stranslocation machinery component7e-50197
NC_016857:3028421:3049331304933130503621032Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74translocation machinery component7e-50197
NC_016860:3029272:3050185305018530512161032Salmonella enterica subsp. enterica serovar Typhimurium strtranslocation machinery component7e-50197
NC_016863:2974333:2995245299524529962761032Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1translocation machinery component7e-50197
NC_017046:3027161:3048071304807130491021032Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island 1 effector protein7e-50197
NC_010102:2967464:298973729897372990672936Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-49196
NC_004631:2842453:2864622286462228656441023Salmonella enterica subsp. enterica serovar Typhi Ty2, completepathogenicity island 1 effector protein4e-49195
NC_006511:2819128:2841301284130128423231023Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity island 1 effector protein4e-49195
NC_003198:2856596:2878765287876528797871023Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity island 1 effector protein4e-49195
NC_011147:2814664:2836837283683728378591023Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein4e-49195
NC_011149:2912219:2935281293528129363121032Salmonella enterica subsp. enterica serovar Agona str. SL483,type III effector protein IpaD/SipD/SspD5e-49194
NC_016832:2829767:2851921285192128529431023Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cell invasion protein sipD6e-49194
NC_010067:84093:8720487204882261023Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-47188
NC_013971:1660144:1691728169172816928791152Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein2e-1687
NC_013961:1622616:1654201165420116553521152Erwinia amylovora, complete genomeCell invasion protein SipD2e-1687
NC_013961:851044:8794828794828806061125Erwinia amylovora, complete genomeCell invasion protein sipD2e-1583.6
NC_013971:2876733:2890694289069428918181125Erwinia amylovora ATCC 49946 chromosome, complete genometype III effector protein2e-1583.6
NC_010694:2971170:2984655298465529858151161Erwinia tasmaniensis, complete genomePutative invasin-like protein (36 kDa membrane antigen)7e-1581.6
NC_013722:1689125:1703391170339117052711881Xanthomonas albilineans, complete genomeputative xsa-invasion protein2e-1480.1
NC_011750:4390000:4423335442333544246841350Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-1479.3
NC_012214:2221702:2235822223582222369731152Erwinia pyrifoliae Ep1/96, complete genomePutative invasin-like protein SipD1e-1377.4
NC_011751:4293966:4305115430511543064641350Escherichia coli UMN026 chromosome, complete genomehypothetical protein7e-1375.1
NC_010694:2138000:2148360214836021494541095Erwinia tasmaniensis, complete genomePathogenicity island effector protein5e-1065.5