Pre_GI: BLASTP Hits

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Query: NC_010660:86445:102451 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 102451, End: 104352, Length: 1902

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011274:2881306:2900143290014329022002058Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island 1 effector protein6e-28126
NC_016856:3026426:3044916304491630469732058Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssecreted effector protein1e-27125
NC_011147:2814664:2834761283476128368182058Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein3e-27124
NC_003197:3005842:3024679302467930267362058Salmonella typhimurium LT2, complete genomesecreted effector protein2e-27124
NC_016810:3028421:3047255304725530493122058Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity island 1 effector protein2e-27124
NC_016857:3028421:3047255304725530493122058Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74secreted effector protein2e-27124
NC_016860:3029272:3048109304810930501662058Salmonella enterica subsp. enterica serovar Typhimurium strsecreted effector protein2e-27124
NC_016863:2974333:2993169299316929952262058Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1secreted effector protein2e-27124
NC_003198:2856596:2876689287668928787462058Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity island 1 effector protein (function unknown)2e-27124
NC_004631:2842453:2862546286254628646032058Salmonella enterica subsp. enterica serovar Typhi Ty2, completepathogenicity island 1 effector protein2e-27124
NC_011294:2890500:2909339290933929113962058Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island 1 effector protein2e-27124
NC_006511:2819128:2839225283922528412822058Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity island 1 effector protein (function unknown)3e-27124
NC_006905:2960260:2978207297820729802642058Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein7e-27122
NC_011205:3050235:3069076306907630710882013Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853cell invasion protein SipA3e-26120
NC_011080:2982346:3001183300118330031952013Salmonella enterica subsp. enterica serovar Newport str. SL254,cell invasion protein SipA3e-26120
NC_010102:2967464:2987661298766129896732013Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-26120
NC_017046:3027161:3045995304599530480072013Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island 1 effector protein4e-26120
NC_016832:2829767:2849845284984528518572013Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cell invasion protein sipA4e-26120
NC_016831:2867766:2886603288660328885431941Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity island 1 effector protein8e-26119
NC_012125:2938519:2958590295859029606022013Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity island 1 effector protein1e-25118
NC_011149:2912219:2933205293320529352172013Salmonella enterica subsp. enterica serovar Agona str. SL483,cell invasion protein SipA1e-24115
NC_010067:84093:8827988279902611983Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-23110
NC_015761:2726000:2744227274422727463442118Salmonella bongori NCTC 12419, complete genomepathogenicity island 1 effector protein2e-22108
NC_011094:2913500:2931884293188429338962013Salmonella enterica subsp. enterica serovar Schwarzengrund strcell invasion protein SipA2e-21105