Pre_GI: BLASTP Hits

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Query: NC_010658:3774110:3781816 Shigella boydii CDC 3083-94, complete genome

Start: 3781816, End: 3783069, Length: 1254

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007613:3637832:3644592364459236458451254Shigella boydii Sb227, complete genomelipid A-core surface polymer ligase0780
NC_009801:4108179:4114930411493041161831254Escherichia coli E24377A, complete genomeO-antigen polymerase0769
NC_012947:94930:1066111066111078641254Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeO-antigen polymerase0768
NC_012967:3729813:3736573373657337378261254Escherichia coli B str. REL606 chromosome, complete genomeLipid A-core, surface polymer ligase0768
NC_016822:4093000:4104495410449541057481254Shigella sonnei 53G, complete genomelipid A-core, surface polymer ligase0768
NC_010468:80000:9152891528927811254Escherichia coli ATCC 8739, complete genomeO-antigen polymerase0768
CU928160:3862935:3869686386968638709391254Escherichia coli IAI1 chromosome, complete genomelipid A-core surface O-antigen ligase0768
NC_009800:3821824:3828575382857538298281254Escherichia coli HS, complete genomeO-antigen polymerase0768
NC_011741:3862935:3869686386968638709391254Escherichia coli IAI1 chromosome, complete genomelipid A-core surface O-antigen ligase0768
NC_007384:3956465:3967635396763539688881254Shigella sonnei Ss046, complete genomelipid A-core, surface polymer ligase0768
NC_016902:88500:99957999571012101254Escherichia coli KO11FL chromosome, complete genomeO-antigen polymerase0766
CP002185:3998112:4004863400486340061161254Escherichia coli W, complete genomeO-antigen polymerase0766
CP002516:88500:99957999571012101254Escherichia coli KO11, complete genomeO-antigen polymerase0766
NC_008563:4083558:4090318409031840915711254Escherichia coli APEC O1, complete genomelipid A-core, surface polymer ligase0765
NC_007946:4050762:4057522405752240587751254Escherichia coli UTI89, complete genomeputative lipid A-core surface polymer ligase0765
NC_011742:3998285:4005045400504540062981254Escherichia coli S88 chromosome, complete genomelipid A-core surface O-antigen ligase0765
NC_011750:4307166:4313917431391743151701254Escherichia coli IAI39 chromosome, complete genomelipid A-core surface O-antigen ligase0765
NC_008253:3896704:3903464390346439047171254Escherichia coli 536, complete genomelipid A-core:surface polymer ligase WaaL0763
NC_004431:4223232:4229992422999242312451254Escherichia coli CFT073, complete genomeLipid A-core, surface polymer ligase0763
NC_010498:4031500:4037015403701540382681254Escherichia coli SMS-3-5, complete genomeO-antigen polymerase0759
NC_007606:3784847:3791534379153437927871254Shigella dysenteriae Sd197, complete genomelipid A-core:surface polymer ligase WaaL1e-47191
NC_013421:4790696:4795134479513447964171284Pectobacterium wasabiae WPP163, complete genomeO-antigen polymerase2e-42173
NC_004547:164000:1822611822611835441284Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeO-antigen ligase5e-41169
NC_009792:4658909:4665074466507446663571284Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-35148
NC_000913:3786124:3794971379497137962301260Escherichia coli K12, complete genomeO-antigen ligase5e-29129
AC_000091:3827856:3842208384220838434671260Escherichia coli W3110 DNA, complete genomeO-antigen ligase5e-29129
NC_010473:3883701:3892548389254838938071260Escherichia coli str. K-12 substr. DH10B, complete genomeO-antigen ligase5e-29129
NC_012759:3675396:3683297368329736845561260Escherichia coli BW2952 chromosome, complete genomeO-antigen ligase5e-29129
NC_004547:164000:1805431805431817691227Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeO-antigen ligase4e-29129
NC_013421:4790696:4797182479718247984141233Pectobacterium wasabiae WPP163, complete genomeO-antigen polymerase9e-29128
NC_016816:127802:1613071613071625151209Pantoea ananatis LMG 5342, complete genomeO-antigen ligase1e-1378.2
NC_014837:2803447:2806126280612628073941269Pantoea sp. At-9b chromosome, complete genomehypothetical protein6e-0755.8
NC_016602:103878:1514641514641525491086Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceO-antigen ligase1e-0654.3