Pre_GI: BLASTP Hits

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Query: NC_010407:2038499:2053522 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Start: 2053522, End: 2054748, Length: 1227

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019673:1039258:1057786105778610590931308Saccharothrix espanaensis DSM 44229 complete genomePermease, MFS-type3e-41169
NC_006361:4597718:4620495462049546217811287Nocardia farcinica IFM 10152, complete genomeputative transporter9e-41167
NC_013093:1036772:1060794106079410621011308Actinosynnema mirum DSM 43827, complete genomemajor facilitator superfamily MFS_13e-39163
NC_014814:3926676:3938970393897039402351266Mycobacterium sp. Spyr1 chromosome, complete genomearabinose efflux permease family protein1e-38160
NC_010545:404111:4256284256284268811254Corynebacterium urealyticum DSM 7109, complete genomeputative permease of the major facilitator superfamily7e-28125
NC_016935:2567039:2618956261895626201641209Paenibacillus mucilaginosus 3016 chromosome, complete genomemultidrug resistance protein1e-1068.2
NC_015690:2039215:2069428206942820706361209Paenibacillus mucilaginosus KNP414 chromosome, complete genomemultidrug resistance protein4e-1066.2
NC_015602:117939:1500791500791515391461Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeMFS family major facilitator transporter1e-0861.2
NC_010080:1685280:1689812168981216912721461Lactobacillus helveticus DPC 4571, complete genomeMultidrug transporter1e-0861.2
NC_015214:1700000:1705157170515717066171461Lactobacillus acidophilus 30SC chromosome, complete genomePermease of the major facilitator superfamily protein2e-0860.8
NC_014106:1658103:1662321166232116637811461Lactobacillus crispatus ST1, complete genomePermease of the major facilitator superfamily2e-0860.5
NC_014724:1731238:1736389173638917378491461Lactobacillus amylovorus GRL 1112 chromosome, complete genomePermease of the major facilitator superfamily protein2e-0860.5
NC_008530:469802:4842704842704857331464Lactobacillus gasseri ATCC 33323, complete genomePermease of the major facilitator superfamily3e-0860.1
NC_016011:1419394:1419394141939414205871194Listeria ivanovii subsp. ivanovii PAM 55, complete genomeputative multidrug-efflux transporter3e-0859.7
NC_005362:550823:5652845652845667411458Lactobacillus johnsonii NCC 533, complete genomemajor facilitator superfamily permease4e-0859.7
NC_013504:447891:4623544623544638111458Lactobacillus johnsonii FI9785 chromosome, complete genomemajor facilitator superfamily permease4e-0859.7
NC_010184:5120359:5141318514131851424811164Bacillus weihenstephanensis KBAB4, complete genomemajor facilitator superfamily MFS_16e-0858.9
NC_014727:1537183:1542500154250015439481449Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,permease of the major facilitator superfamily3e-0756.6
NC_016641:5671186:5699024569902457002201197Paenibacillus terrae HPL-003 chromosome, complete genomemajor facilitator superfamily protein7e-0755.5
NC_010410:3606826:3671432367143236726071176Acinetobacter baumannii AYE, complete genomeTetracycline resistance protein, class G (TETA(G))7e-0755.5
NC_003919:5056650:5075447507544750767121266Xanthomonas axonopodis pv. citri str. 306, complete genometetracycline-efflux transporter7e-0755.5
NC_015216:2113556:2132892213289221345711680Methanobacterium sp. AL-21 chromosome, complete genomemajor facilitator superfamily protein7e-0755.5
NC_003197:1611302:1621409162140916226501242Salmonella typhimurium LT2, complete genomeputative multidrug efflux protein1e-0654.3
NC_016810:1576636:1578262157826215795031242Salmonella enterica subsp. enterica serovar Typhimurium strputative multidrug efflux protein1e-0654.3
NC_016856:1621279:1631386163138616326271242Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative multidrug efflux protein1e-0654.3
NC_016857:1576636:1578262157826215795031242Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative multidrug efflux protein1e-0654.3
NC_016860:1614280:1619099161909916203401242Salmonella enterica subsp. enterica serovar Typhimurium strputative multidrug efflux protein1e-0654.3
NC_016863:1575488:1579577157957715808181242Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative multidrug efflux protein1e-0654.3
NC_017046:1574057:1578146157814615793871242Salmonella enterica subsp. enterica serovar Typhimurium str. 798multidrug efflux protein1e-0654.3
NC_013665:2132000:2133936213393621351441209Methanocella paludicola SANAE, complete genomeMFS transporter2e-0653.9
NC_007907:2306561:2319304231930423206921389Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0653.9
NC_011094:1584038:1588857158885715900981242Salmonella enterica subsp. enterica serovar Schwarzengrund strmajor facilitator superfamily protein2e-0653.5
NC_011149:1578451:1592785159278515940261242Salmonella enterica subsp. enterica serovar Agona str. SL483,major facilitator superfamily MFS_14e-0652.8
NC_003198:1463253:1472365147236514736061242Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative multidrug efflux protein4e-0652.8
NC_020291:1149887:1166431116643111678881458Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomearabinose efflux permease family protein9e-0651.6
NC_019896:1483073:1508442150844215096441203Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeMultidrug resistance protein 29e-0651.6
NC_014976:684000:7008387008387020401203Bacillus subtilis BSn5 chromosome, complete genomeefflux transporter1e-0551.6
NC_000964:2702376:2716199271619927174011203Bacillus subtilis subsp. subtilis str. 168, complete genomemultidrug-efflux transporter1e-0551.6