Pre_GI: BLASTP Hits

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Query: NC_010322:768849:791778 Pseudomonas putida GB-1 chromosome, complete genome

Start: 791778, End: 792734, Length: 957

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008027:4889662:489228348922834893212930Pseudomonas entomophila L48, complete genomeFecR-like transmembrane sensor4e-48192
NC_018691:1293449:131480613148061315771966Alcanivorax dieselolei B5 chromosome, complete genomeAnti-FecI sigma factor FecR1e-47190
NC_012759:4433500:445352244535224454475954Escherichia coli BW2952 chromosome, complete genomefec operon regulator FecR5e-47188
AC_000091:4501430:452144445214444522397954Escherichia coli W3110 DNA, complete genometransmembrane signal transducer for ferric citrate transport5e-47188
NC_010473:4596500:461659546165954617548954Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; transmembrane signal transducer for ferric citrate transport5e-47188
NC_016822:4889656:489301448930144893967954Shigella sonnei 53G, complete genomefec operon regulator FecR8e-47187
NC_015572:427732:455162455162456127966Methylomonas methanica MC09 chromosome, complete genomeanti-FecI sigma factor FecR1e-46187
NC_014228:3591758:3599750359975036007931044Xenorhabdus nematophila ATCC 19061, complete genomeProtein fecR1e-45184
NC_008027:2648560:265110926511092652029921Pseudomonas entomophila L48, complete genomeFecR-like transmembrane sensor8e-45181
NC_018691:318662:318662318662319606945Alcanivorax dieselolei B5 chromosome, complete genomeAnti-FecI sigma factor, FecR3e-44179
NC_012962:4591295:459839645983964599361966Photorhabdus asymbiotica, complete genomeprotein fecr2e-42173
NC_016612:3843358:387155938715593872506948Klebsiella oxytoca KCTC 1686 chromosome, complete genomefec operon regulator FecR3e-42172
NC_005126:5188976:519356151935615194526966Photorhabdus luminescens subsp. laumondii TTO1, complete genomeProtein fecR1e-41170
NC_016830:3697173:371480137148013715781981Pseudomonas fluorescens F113 chromosome, complete genomeFe2+-dicitrate sensor membrane protein6e-41167
NC_015556:2265940:230352123035212304444924Pseudomonas fulva 12-X chromosome, complete genomeanti-FecI sigma factor, FecR7e-41167
NC_007974:934000:952517952517953503987Ralstonia metallidurans CH34 chromosome 2, complete sequenceputative FecR7e-40164
NC_004547:1174650:120816712081671209129963Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeiron(III) dicitrate sensor protein1e-39163
NC_014640:2693060:269635326963532697321969Achromobacter xylosoxidans A8 chromosome, complete genomeFecR family protein2e-39162
NC_014640:5047201:506272550627255063720996Achromobacter xylosoxidans A8 chromosome, complete genomeFecR family protein7e-36151
NC_010322:768849:785508785508786506999Pseudomonas putida GB-1 chromosome, complete genomeanti-FecI sigma factor FecR6e-34144
NC_005966:1780468:178461817846181785559942Acinetobacter sp. ADP1, complete genomemembrane bound regulator in multi-component regulatory system with cytoplasmic FecI (sigma factor) and FecA (outer membrane receptor)4e-30132
NC_015410:1324313:132982813298281330793966Pseudomonas mendocina NK-01 chromosome, complete genomeputative transmembrane sensor1e-29130
NC_015563:4093650:4097302409730240983301029Delftia sp. Cs1-4 chromosome, complete genomeanti-FecI sigma factor FecR1e-26120
NC_012560:201237:216665216665217627963Azotobacter vinelandii DJ, complete genomeanti-sigma factor, FecR family1e-26120
NC_021150:201237:216665216665217627963Azotobacter vinelandii CA6, complete genomeanti-sigma factor, FecR family1e-26120
NC_014640:5047201:5066881506688150678941014Achromobacter xylosoxidans A8 chromosome, complete genomeFecR family protein3e-25115
NC_014664:1360524:137378513737851374765981Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeanti-FecI sigma factor, FecR4e-25115
NC_002516:1474000:147546414754641476306843Pseudomonas aeruginosa PAO1, complete genomeprobable transmembrane sensor9e-22104
NC_018691:359695:359695359695360609915Alcanivorax dieselolei B5 chromosome, complete genomeAnti-FecI sigma factor, FecR8e-22104
NC_007953:1088933:108798010879801088936957Burkholderia xenovorans LB400 chromosome 3, complete sequencePutative FecR2e-21103
NC_009937:5033152:503543550354355036382948Azorhizobium caulinodans ORS 571, complete genomeputative iron siderophore sensor protein3e-21102
NC_011144:2710876:272531427253142726300987Phenylobacterium zucineum HLK1, complete genometranscriptional regulator6e-2098.2
NC_015593:2841856:288455028845502885536987Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeanti-FecI sigma factor FecR2e-1789.7
NC_014100:2782000:280326228032622804257996Caulobacter segnis ATCC 21756 chromosome, complete genomeanti-FecI sigma factor FecR5e-1789
NC_017192:1933106:193807519380751939040966Arcobacter sp. L, complete genomesigma factor regulator1e-1687.4
NC_010995:2123909:2130175213017521311971023Cellvibrio japonicus Ueda107, complete genomeprobable transmembrane sensor3e-1686.3
NC_015497:4683741:470812247081224709078957Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeanti-FecI sigma factor, FecR2e-1583.6
NC_015594:1210736:121465212146521215626975Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeanti-FecI sigma factor FecR2e-1583.6
NC_010338:2136193:2139478213947821405121035Caulobacter sp. K31, complete genomeanti-FecI sigma factor, FecR7e-1478.2
NC_014934:869715:8749888749888761511164Cellulophaga algicola DSM 14237 chromosome, complete genomeanti-feci sigma factor, fecr4e-1375.9
NC_013421:1954915:197058119705811971534954Pectobacterium wasabiae WPP163, complete genomeanti-FecI sigma factor, FecR6e-1375.1
NC_007947:1429165:1440674144067414417201047Methylobacillus flagellatus KT, complete genomeputative FecR1e-1274.3
NC_012560:2546000:254697025469702547803834Azotobacter vinelandii DJ, complete genomeAnti-sigma factor, FecR family2e-1273.6
NC_021150:2546000:254698225469822547815834Azotobacter vinelandii CA6, complete genomeAnti-sigma factor, FecR family2e-1273.6
NC_016112:1735044:175536217553621756315954Methylomicrobium alcaliphilum chromosome, complete genomeAnti-FecI sigma factor, FecR2e-1273.2
NC_014540:2908912:291099429109942911962969Burkholderia sp. CCGE1003 chromosome 2, complete sequenceanti-FecI sigma factor, FecR6e-1272
NC_008687:133728:153212153212154198987Paracoccus denitrificans PD1222 chromosome 2, complete sequenceputative FecR5e-1272
NC_020409:584000:5932265932265942901065Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative Anti-FecI sigma factor, FecR7e-1271.6
NC_015160:4285542:4298357429835742994991143Odoribacter splanchnicus DSM 20712 chromosome, complete genomeanti-FecI sigma factor, FecR4e-1168.9
NC_014375:1146328:117307511730751174031957Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeanti-FecI sigma factor, FecR7e-1168.6
NC_010510:339879:345373345373346371999Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeanti-FecI sigma factor, FecR3e-1066.2
NC_008686:1592073:161110316111031612077975Paracoccus denitrificans PD1222 chromosome 1, complete sequenceputative FecR7e-1065.1
NC_013132:1165218:1166951116695111680991149Chitinophaga pinensis DSM 2588, complete genomeanti-FecI sigma factor, FecR2e-0963.5
NC_015976:3118804:311880431188043119787984Sphingobium sp. SYK-6, complete genomeputative anti-sigma factor3e-0962.8
NC_016610:1805126:1820970182097018221481179Tannerella forsythia ATCC 43037 chromosome, complete genomesigma factor regulatory protein, FecR/PupR family5e-0962
NC_015164:1812439:182494818249481825859912Bacteroides salanitronis DSM 18170 chromosome, complete genomeanti-FecI sigma factor, FecR7e-0961.6
NC_009615:2709040:2723565272356527246441080Parabacteroides distasonis ATCC 8503 chromosome, complete genomeanti-sigma factor7e-0961.6
NC_014305:97055:99531995311005651035Erwinia billingiae Eb661 plasmid pEB170, complete sequenceAnti-FecI sigma factor7e-0961.6
NC_015160:1734454:1749552174955217507301179Odoribacter splanchnicus DSM 20712 chromosome, complete genomeanti-FecI sigma factor, FecR1e-0860.8
NC_009040:43791:623866238663360975Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeputative FecR1e-0860.5
NC_011958:1121387:114404611440461145020975Rhodobacter sphaeroides KD131 chromosome 2, complete genomeFecR protein2e-0860.5
NC_013061:1236235:1260605126060512617591155Pedobacter heparinus DSM 2366, complete genomeFecR protein2e-0860.1
NC_009615:4031335:404787540478754048804930Parabacteroides distasonis ATCC 8503 chromosome, complete genomeanti-sigma factor2e-0860.1
NC_006347:625328:637012637012637941930Bacteroides fragilis YCH46, complete genomeputative anti-sigma factor2e-0860.1
NC_010943:1379707:138250813825081383476969Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane protein3e-0859.7
NC_016776:625628:640475640475641404930Bacteroides fragilis 638R, complete genomeputative anti-sigma factor6e-0858.5
NC_013061:1052957:1058539105853910597021164Pedobacter heparinus DSM 2366, complete genomeFecR protein6e-0858.5
NC_015164:2683162:268805026880502688976927Bacteroides salanitronis DSM 18170 chromosome, complete genomeanti-FecI sigma factor, FecR1e-0757.4
NC_015966:1145974:1168398116839811694411044Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeFecR anti-FecI sigma factor2e-0756.6
NC_016609:2951301:2974250297425029754611212Niastella koreensis GR20-10 chromosome, complete genomeanti-FecI sigma factor FecR3e-0756.2
NC_015160:1786350:1805893180589318070381146Odoribacter splanchnicus DSM 20712 chromosome, complete genomeanti-FecI sigma factor, FecR1e-0654.3
NC_015160:1961789:1979274197927419804191146Odoribacter splanchnicus DSM 20712 chromosome, complete genomeanti-FecI sigma factor, FecR9e-0651.2