Pre_GI: BLASTP Hits

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Query: NC_010102:4557037:4574291 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 4574291, End: 4575394, Length: 1104

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014121:489500:5192025192025203981197Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-173608
NC_011745:3443371:3446437344643734476871251Escherichia coli ED1a chromosome, complete genomeputative plasmid transfer protein2e-130466
NC_004547:611178:6190346190346202361203Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative plasmid transfer protein3e-109395
NC_013421:701005:7394377394377406361200Pectobacterium wasabiae WPP163, complete genomeputative plasmid transfer protein6e-109394
NC_011748:4792703:480058548005854801385801Escherichia coli 55989, complete genome2e-96353
CU928145:4792703:480058548005854801385801Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein, putative plasmid transfer protein (partial)2e-96353
NC_016822:3420826:342900434290043429765762Shigella sonnei 53G, complete genomeputative plasmid transfer protein6e-96351
NC_017328:3088907:309906630990663099866801Shigella flexneri 2002017 chromosome, complete genomehypothetical protein5e-96351
NC_016816:4129299:4132852413285241340601209Pantoea ananatis LMG 5342, complete genometype IV pilus protein, TraF1e-95350
NC_004741:3041294:305149230514923052253762Shigella flexneri 2a str. 2457T, complete genomehypothetical protein1e-93343
NC_004337:3049118:305931630593163060077762Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-93343
NC_013961:3413011:3432092343209234333241233Erwinia amylovora, complete genomehypothetical protein7e-93340
NC_013971:335247:3380583380583392901233Erwinia amylovora ATCC 49946 chromosome, complete genomeplasmid transfer protein7e-93340
NC_013592:956829:9599709599709612171248Dickeya dadantii Ech586, complete genomeputative plasmid transfer protein1e-89330
NC_007384:3383983:339417933941793394844666Shigella sonnei Ss046, complete genomehypothetical protein5e-86318
NC_016945:666000:6841916841916853511161Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein5e-35149
NC_016628:193000:1993481993482005201173Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein7e-32138
NC_009456:557962:5589135589135600791167Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein5e-28125
NC_012583:683887:7038637038637050291167Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein5e-28125
NC_012667:839318:8596558596558608211167Vibrio cholerae MJ-1236 chromosome 2, complete genomeTraF-related protein5e-28125
NC_013457:140474:1466111466111477321122Vibrio sp. Ex25 chromosome 2, complete genomeTraF-related protein3e-25116
NC_005140:883857:8997958997959009041110Vibrio vulnificus YJ016 chromosome II, complete sequencehypothetical protein4e-25115
NC_014966:919442:9301189301189311461029Vibrio vulnificus MO6-24/O chromosome II, complete sequencetraF-related protein4e-24112