Pre_GI: BLASTP Hits

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Query: NC_010102:283364:301811 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 301811, End: 302491, Length: 681

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2805877:280636928063692807049681Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein4e-130463
NC_011080:2789744:279147727914772792157681Salmonella enterica subsp. enterica serovar Newport str. SL254,DTW domain protein9e-130462
NC_011149:2701916:270240827024082703088681Salmonella enterica subsp. enterica serovar Agona str. SL483,DTW domain protein3e-129461
NC_003198:2703013:270474627047462705426681Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-128458
NC_004631:283289:299423299423300103681Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-128458
CP002185:2889656:289014428901442890842699Escherichia coli W, complete genomeconserved protein6e-115412
CP002516:1196000:121501412150141215712699Escherichia coli KO11, complete genomeDTW domain containing protein6e-115412
CU928160:2785792:278628027862802786978699Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein3e-114410
NC_009648:3192483:319248331924833193181699Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein2e-106384
NC_013850:1198134:121730212173021218000699Klebsiella variicola At-22 chromosome, complete genomeDTW domain containing protein6e-106383
NC_020211:4168189:416818941681894168884696Serratia marcescens WW4, complete genomehypothetical protein9e-77286
NC_009832:4136878:413687841368784137582705Serratia proteamaculans 568, complete genomeDTW domain containing protein3e-76284
NC_015566:4205854:420585442058544206558705Serratia sp. AS12 chromosome, complete genomeDTW domain-containing protein2e-75281
NC_015733:1398083:141844214184421419152711Pseudomonas putida S16 chromosome, complete genomeDTW domain-containing protein9e-58223
NC_007948:5026122:503786050378605038618759Polaromonas sp. JS666, complete genomehypothetical protein2e-53209
NC_018678:2382708:238792223879222388614693Alteromonas macleodii str. 'English Channel 673' chromosome,hypothetical protein2e-53208
NC_014931:2511423:251544525154452516218774Variovorax paradoxus EPS chromosome, complete genomeDTW domain containing protein4e-50197
NC_010524:4788753:479368147936814794406726Leptothrix cholodnii SP-6, complete genomeDTW domain containing protein7e-43173
NC_015500:533528:536697536697537458762Treponema brennaborense DSM 12168 chromosome, complete genomeDTW domain containing protein1e-0860.1