Pre_GI: BLASTP Hits

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Query: NC_010102:283364:295078 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 295078, End: 295193, Length: 116

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011080:2789744:279899127989912799106116Salmonella enterica subsp. enterica serovar Newport str. SL254,5S ribosomal RNA3e-1477.4
NC_011149:2701916:270988227098822709997116Salmonella enterica subsp. enterica serovar Agona str. SL483,5S ribosomal RNA7e-1475.9
CP002797:4812799:482317448231744823289116Escherichia coli NA114, complete genome5S ribosomal RNA1e-1375.5
NC_012779:610509:627667627667627782116Edwardsiella ictaluri 93-146, complete genome5S ribosomal RNA1e-1375.1
NC_016902:3863932:388255938825593882674116Escherichia coli KO11FL chromosome, complete genome5S ribosomal RNA1e-1374.7
CP002516:1196000:120874812087481208863116Escherichia coli KO11, complete genome5S ribosomal RNA1e-1374.7
NC_010067:4149298:415721141572114157326116Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5S ribosomal RNA1e-1374.7
CP002516:3863932:388255938825593882674116Escherichia coli KO11, complete genome5S ribosomal RNA1e-1374.7
NC_015566:4205854:421272142127214212836116Serratia sp. AS12 chromosome, complete genome5S ribosomal RNA4e-1373.6
NC_009832:4136878:414391041439104144025116Serratia proteamaculans 568, complete genome5S ribosomal RNA4e-1373.6
NC_010067:4149298:415745641574564157571116Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5S ribosomal RNA5e-1373.2
NC_015964:1389628:140163114016311401746116Haemophilus parainfluenzae T3T1, complete genome5S ribosomal RNA4e-0960.1
NC_006371:1997954:200689020068902007007118Photobacterium profundum SS9 chromosome 2, complete sequence5S ribosomal RNA4e-0857
NC_008577:44184:558265582655941116Shewanella sp. ANA-3 chromosome 1, complete sequence5S ribosomal RNA5e-0856.6
NC_011186:515214:529052529052529172121Vibrio fischeri MJ11 chromosome II, complete sequence5S ribosomal RNA2e-0754.3
NC_008610:1068429:107726410772641077379116Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),5S ribosomal RNA3e-0650.4