Pre_GI: BLASTP Hits

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Query: NC_009708:915814:921909 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

Start: 921909, End: 922118, Length: 210

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:3241196:325885132588513259057207Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephage transcriptional regulator, AlpA2e-24111
NC_013716:5201097:523170852317085231914207Citrobacter rodentium ICC168, complete genomepuative transcriptional regulator1e-22104
NC_013592:446092:462842462842463054213Dickeya dadantii Ech586, complete genomephage transcriptional regulator, AlpA1e-22104
NC_011751:3453683:350983635098363510096261Escherichia coli UMN026 chromosome, complete genome2e-22104
NC_013941:3676146:370774337077433707949207Escherichia coli O55:H7 str. CB9615 chromosome, complete genometranscriptional regulator2e-22104
NC_013353:3627355:365955836595583659764207Escherichia coli O103:H2 str. 12009, complete genometranscriptional regulator2e-22104
AP010958:3627355:365955836595583659764207Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted transcriptional regulator2e-22104
NC_004431:279868:282559282559282765207Escherichia coli CFT073, complete genomehypothetical protein2e-22104
NC_015663:549425:570501570501570707207Enterobacter aerogenes KCTC 2190 chromosome, complete genomephage transcriptional regulator AlpA9e-22102
NC_004431:3409389:348674734867473487007261Escherichia coli CFT073, complete genomehypothetical protein8e-22102
NC_008253:3161311:316248631624863162692207Escherichia coli 536, complete genomeputative regulatory protein6e-22102
NC_017328:3088907:312241231224123122618207Shigella flexneri 2002017 chromosome, complete genomeRegulator of excision1e-21101
NC_004337:3049118:308270830827083082914207Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-21101
NC_004741:3041294:307353830735383073744207Shigella flexneri 2a str. 2457T, complete genomehypothetical protein1e-21101
AP010958:5272863:528282052828205283026207Escherichia coli O103:H2 str. 12009 DNA, complete genomeprobable DNA binding protein4e-21100
NC_013353:5272863:528282052828205283026207Escherichia coli O103:H2 str. 12009, complete genomeDNA binding protein4e-21100
NC_020418:116500:137273137273137482210Morganella morganii subsp. morganii KT, complete genomeputative regulatory protein3e-21100
NC_014618:4114004:413381341338134134079267Enterobacter cloacae SCF1 chromosome, complete genomephage transcriptional regulator AlpA3e-21100
NC_013971:3296272:330740533074053307602198Erwinia amylovora ATCC 49946 chromosome, complete genomephage-regulatory protein5e-2199.8
NC_013961:441719:463698463698463895198Erwinia amylovora, complete genomeUncharacterized protein ORF885e-2199.8
NC_010465:3431500:343247334324733432679207Yersinia pseudotuberculosis YPIII, complete genomephage transcriptional regulator, AlpA7e-2199.4
NC_013421:1505176:150927615092761509488213Pectobacterium wasabiae WPP163, complete genomephage transcriptional regulator, AlpA1e-2098.2
NC_011750:4390000:439414243941424394378237Escherichia coli IAI39 chromosome, complete genomeputative phage regulatory protein2e-2097.8
NC_004431:4319152:432964443296444329877234Escherichia coli CFT073, complete genomehypothetical protein2e-2097.8
NC_010498:4856011:487603348760334876266234Escherichia coli SMS-3-5, complete genomeAlpA family transcriptional regulator2e-2097.8
NC_008253:3941938:397542639754263975659234Escherichia coli 536, complete genomeputative regulatory protein2e-2097.8
NC_011745:3405520:341461934146193414852234Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-2097.8
NC_011748:4950723:496570849657084965944237Escherichia coli 55989, complete genomeconserved hypothetical protein; putative phage regulatory protein2e-2097.8
CU928145:4950723:496570849657084965944237Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative phage regulatory protein2e-2097.8
NC_016902:4236680:424263542426354242853219Escherichia coli KO11FL chromosome, complete genomephage transcriptional regulator, AlpA3e-2097.4
CP002516:4236680:424263542426354242853219Escherichia coli KO11, complete genomephage transcriptional regulator, AlpA3e-2097.4
CP002185:4750571:477001647700164770234219Escherichia coli W, complete genomepredicted AlpA-like transcriptional regulator3e-2097.4
NC_016612:2009927:204035620403562040562207Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative regulatory protein6e-2095.9
NC_011415:308825:315998315998316264267Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-1994.7
NC_015663:1:270812708127320240Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-1993.6
NC_015663:1869000:187989218798921880185294Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative phage regulatory protein5e-1993.2
NC_011750:4775770:478416447841644784337174Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-1890.1
NC_011083:4547825:458032145803214580494174Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional regulator, AlpA family4e-1890.1
CP002516:44744:552865528655489204Escherichia coli KO11, complete genomephage transcriptional regulator, AlpA1e-1685.1
CP002185:4035502:405058440505844050787204Escherichia coli W, complete genomehypothetical protein1e-1685.1
NC_016902:44744:552865528655489204Escherichia coli KO11FL chromosome, complete genomephage transcriptional regulator, AlpA1e-1685.1
NC_002655:1103991:111339711133971113594198Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-1683.6
NC_002695:1417912:142523114252311425428198Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1683.6
NC_013008:1354988:136910313691031369300198Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-1683.6
NC_013361:1335166:134566313456631345860198Escherichia coli O26:H11 str. 11368 chromosome, complete genomeregulatory protein3e-1683.6
NC_013364:1306756:131724813172481317445198Escherichia coli O111:H- str. 11128, complete genomeputative DNA binding protein3e-1683.6
NC_011740:2859933:286231628623162862525210Escherichia fergusonii ATCC 35469, complete genomeputative regulatory protein4e-1683.2
NC_004431:279868:288649288649288786138Escherichia coli CFT073, complete genomehypothetical protein3e-1373.6
NC_013971:3117000:313278731327873133716930Erwinia amylovora ATCC 49946 chromosome, complete genomeATPase5e-1269.7
NC_015663:1356982:137202113720211372422402Enterobacter aerogenes KCTC 2190 chromosome, complete genometranscriptional regulator, AlpA family protein5e-1166.6
NC_020260:882307:901042901042901233192Cronobacter sakazakii Sp291, complete genomeputative IS3 family transposase orfB1e-1065.1
NC_014121:3776902:378543237854323785623192Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative IS3 family transposase orfB1e-1065.1
NC_009662:1329788:133831513383151338509195Nitratiruptor sp. SB155-2, complete genometranscriptional regulator6e-0959.7
NC_013892:3278647:328257832825783282784207Xenorhabdus bovienii SS-2004 chromosome, complete genomeCP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage8e-0855.8
NC_010694:2716348:273867627386762738873198Erwinia tasmaniensis, complete genomePutative hypothetical protein (prophage CP4-57 regulatory protein)1e-0755.1
NC_013892:1272448:129876412987641298970207Xenorhabdus bovienii SS-2004 chromosome, complete genomeCP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage2e-0754.3
CU928160:4570498:458052645805264580732207Escherichia coli IAI1 chromosome, complete genomeputative phage DNA binding protein3e-0753.9
NC_011741:4570498:458052645805264580732207Escherichia coli IAI1 chromosome, complete genomeputative phage DNA binding protein3e-0753.9
NC_009436:3117661:314615831461583146364207Enterobacter sp. 638, complete genomephage transcriptional regulator, AlpA3e-0753.9
NC_008800:1090000:109849810984981098698201Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-0753.5
NC_011745:3245000:326245132624513262654204Escherichia coli ED1a chromosome, complete genomeputative regulatory protein from prophage (AlpA family)4e-0753.5
NC_010067:191190:199577199577199783207Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-0752.4
NC_015379:908904:935089935089935310222Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transcription factor, AlpA family2e-0651.6
NC_011094:638552:652744652744652941198Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-0651.2
NC_011283:4438500:445473644547364454942207Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AlpA family4e-0650.1