Pre_GI: BLASTP Hits

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Query: NC_009708:692508:708541 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

Start: 708541, End: 709128, Length: 588

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006155:3992818:400349940034994004086588Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein9e-102369
NC_010465:733916:748971748971749558588Yersinia pseudotuberculosis YPIII, complete genomeputative transcriptional regulator, CadC1e-100365
NC_010634:3905369:391499039149903915577588Yersinia pseudotuberculosis PB1/+, complete genomeputative transcriptional regulator, CadC1e-99361
NC_008800:3955284:396122039612203961819600Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,membrane protein2e-75281
NC_015224:3820338:383951838395183840099582Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,membrane protein1e-70265
NC_004741:3041294:309354530935453094150606Shigella flexneri 2a str. 2457T, complete genomehypothetical protein8e-31133
NC_004337:3049118:310405631040563104661606Shigella flexneri 2a str. 301, complete genomehypothetical protein8e-31133
NC_017328:3088907:314242331424233143028606Shigella flexneri 2002017 chromosome, complete genomeMembrane protein8e-31133
NC_003197:367430:385573385573386337765Salmonella typhimurium LT2, complete genomeputative inner membrane protein4e-1064.7
NC_016810:366908:385057385057385821765Salmonella enterica subsp. enterica serovar Typhimurium strtransmembrane regulator4e-1064.7
NC_016856:365665:386264386264387028765Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein4e-1064.7
NC_016857:366908:385057385057385821765Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein4e-1064.7
NC_016863:367404:385553385553386317765Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein4e-1064.7
NC_011147:2463299:247395724739572474691735Salmonella enterica subsp. enterica serovar Paratyphi A strtransmembrane regulator5e-1064.3
NC_011083:403022:432730432730433464735Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative transmembrane regulator5e-1064.3
NC_006511:2467763:247842124784212479155735Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible transmembrane regulator5e-1064.3
NC_017046:366905:385084385084385818735Salmonella enterica subsp. enterica serovar Typhimurium str. 798transmembrane regulator5e-1064.3
NC_010102:2721374:273210127321012732865765Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-1063.9
NC_011149:361765:368387368387369121735Salmonella enterica subsp. enterica serovar Agona str. SL483,putative transmembrane regulator6e-1063.9
NC_011094:380428:398373398373399107735Salmonella enterica subsp. enterica serovar Schwarzengrund strtransmembrane regulator6e-1063.9
NC_011080:383441:390063390063390797735Salmonella enterica subsp. enterica serovar Newport str. SL254,putative transmembrane regulator8e-1063.5
NC_004631:2584244:259491425949142595648735Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transmembrane regulator1e-0963.2
NC_003198:378844:385465385465386199735Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transmembrane regulator1e-0963.2
NC_016832:2581145:259181525918152592549735Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transmembrane regulator1e-0963.2
NC_006905:401154:430112430112430876765Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein1e-0963.2
NC_011294:346915:364877364877365641765Salmonella enterica subsp. enterica serovar Enteritidis strtransmembrane regulator9e-1063.2
NC_012125:373630:380252380252380986735Salmonella enterica subsp. enterica serovar Paratyphi C straintransmembrane regulator5e-0960.8
NC_010102:2721374:272890927289092729652744Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0756.6
NC_015663:1:210462104621852807Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transcriptional regulator2e-0755.5
NC_011274:376970:386772386772387515744Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transmembrane regulator2e-0755.5
NC_016831:2627515:263504826350482635791744Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transmembrane regulator2e-0755.5
NC_011094:380428:401567401567402310744Salmonella enterica subsp. enterica serovar Schwarzengrund strresponse regulator3e-0755.1
NC_020064:3998715:406168040616804062153474Serratia marcescens FGI94, complete genomehypothetical protein3e-0754.7
NC_017249:4398000:4413965441396544155271563Bradyrhizobium japonicum USDA 6, complete genomeadenylate cyclase4e-0754.7
NC_012125:373630:383397383397384176780Salmonella enterica subsp. enterica serovar Paratyphi C straintransmembrane regulator1e-0653.1
NC_020064:1962172:198639919863991986998600Serratia marcescens FGI94, complete genomeDNA-binding protein with winged-HTH domain2e-0652.8
NC_011080:383441:393244393244393987744Salmonella enterica subsp. enterica serovar Newport str. SL254,putative response regulator2e-0652.4
NC_016816:2508204:251985925198592520752894Pantoea ananatis LMG 5342, complete genomeputative transcriptional regulator2e-0652.4
NC_004631:2584244:259171125917112592454744Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transmembrane regulator2e-0652.4
NC_003198:378844:388659388659389402744Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transmembrane regulator2e-0652.4
NC_016832:2581145:258861225886122589355744Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transmembrane regulator2e-0652.4
NC_011083:403022:435911435911436654744Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative response regulator2e-0652.4
NC_013956:1994970:200213620021362003050915Pantoea ananatis LMG 20103 chromosome, complete genomeYqeI2e-0652
NC_011149:361765:371579371579372322744Salmonella enterica subsp. enterica serovar Agona str. SL483,putative response regulator3e-0651.6
NC_011147:2463299:247082524708252471508684Salmonella enterica subsp. enterica serovar Paratyphi A strtransmembrane regulator4e-0651.2
NC_006511:2467763:247528924752892475972684Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible transmembrane regulator4e-0651.2
NC_014618:1700784:170658417065841707351768Enterobacter cloacae SCF1 chromosome, complete genometranscriptional regulator CadC7e-0650.4