Pre_GI: BLASTP Hits

Some Help

Query: NC_009705:78000:82551 Yersinia pseudotuberculosis IP 31758 plasmid_153kb, complete

Start: 82551, End: 83390, Length: 840

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013008:918215:932440932440933321882Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector3e-1582.4
NC_011353:921500:930847930847931728882Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenon-LEE-encoded effector NleH3e-1582.4
NC_013941:1014386:102451210245121025393882Escherichia coli O55:H7 str. CB9615 chromosome, complete genomenon-LEE-encoded type III effector H3e-1582.4
NC_002655:919654:929133929133930014882Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by prophage CP-933K3e-1582.4
NC_002695:917509:927482927482928363882Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1582.4
NC_011601:756885:767656767656768537882Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleH-like protein2e-1479.7
NC_013364:863209:882149882149883030882Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector NleH2e-1479.3
NC_013353:867869:876081876081876962882Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector NleH4e-1479
AP010958:867869:876081876081876962882Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector NleH-homolog4e-1479
NC_002655:2264773:228157322815732282484912Escherichia coli O157:H7 EDL933, complete genomehypothetical protein6e-1374.7
NC_002695:1794635:180469318046931805604912Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein6e-1374.7
NC_011353:1716037:172628417262841727195912Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenon-LEE-encoded effector NleH6e-1374.7
NC_011601:1466496:147672414767241477635912Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleH-like protein6e-1374.7
NC_013008:1715831:172525917252591726170912Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector6e-1374.7
NC_013361:1754346:176626017662601767171912Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector NleH6e-1374.7
NC_013364:1997891:200969620096962010607912Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector NleH-like protein6e-1374.7
NC_013941:1613595:162381316238131624724912Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeNon-LEE-encoded type III effector H6e-1374.7
NC_013716:5141269:515254951525495153430882Citrobacter rodentium ICC168, complete genomeT3SS effector protein NleH6e-1271.6
NC_013353:2272919:228414922841492284745597Escherichia coli O103:H2 str. 12009, complete genome2e-0757
AP010958:2272919:228414922841492284745597Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0757
NC_015224:4101939:4118311411831141210612751Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein8e-0754.3