Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4674501 Kineococcus radiotolerans SRS30216, complete genome

Start: 4674501, End: 4674992, Length: 492

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009664:4696961:473045147304514731020570Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-26118
NC_009664:4423829:465064446506444650817174Kineococcus radiotolerans SRS30216, complete genome8e-24109
NC_017093:3777178:379561837956183796130513Actinoplanes missouriensis 431, complete genomeputative RNA polymerase ECF-subfamily sigma factor5e-23107
NC_015434:4640769:466706546670654667562498Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein2e-22104
NC_021177:4124839:414665741466574147223567Streptomyces fulvissimus DSM 40593, complete genomeRNA polymerase ECF-subfamily sigma factor2e-21101
NC_015953:3782302:380522238052223805776555Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-21100
NC_015434:3581001:359056835905683591095528Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein4e-2097.4
NC_015957:527777:538567538567539109543Streptomyces violaceusniger Tu 4113 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1995.5
NC_015953:3159234:316146431614643162048585Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-1994.4
NC_013729:6217500:621908162190816219575495Kribbella flavida DSM 17836, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1892.4
NC_013131:7530000:754581375458137546373561Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-1890.1
NC_016582:5769080:578069657806965781226531Streptomyces bingchenggensis BCW-1 chromosome, complete genomeECF subfamily RNA polymerase sigma factor3e-1787.4
NC_017955:3670670:368276836827683683406639Modestobacter marinus, complete genomeRNA polymerase sigma-E factor8e-1786.3
NC_014666:4547873:455674645567464557366621Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1684.7
NC_014666:4547873:455305045530504553733684Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-1682.8
NC_014830:4012999:100361003610545510Intrasporangium calvum DSM 43043 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1580.9
NC_013131:10413240:104313391043133910431857519Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1374.3
NC_013595:3952196:396014139601413960653513Streptosporangium roseum DSM 43021, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-1373.6
NC_015671:1865752:188091018809101881560651Cellvibrio gilvus ATCC 13127 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1272.8
NC_016111:3052494:309113230911323091815684Streptomyces cattleya NRRL 8057, complete genomeRNA polymerase ECF-subfamily sigma factor4e-1270.9
NC_009664:4347718:437238843723884373200813Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1270.9
NC_009664:4423829:462452046245204625191672Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-1269.3
NC_014318:1537732:154374515437451544242498Amycolatopsis mediterranei U32 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor1e-1169.3
NC_010572:3925803:395301139530113953586576Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative RNA polymerase ECF-subfamily sigma factor1e-1168.6
NC_016582:5769080:579130957913095791824516Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative sigma factor6e-1166.6
NC_013131:10322152:103279401032794010328452513Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1064.3
NC_013929:1119384:113906711390671139573507Streptomyces scabiei 87.22 chromosome, complete genomesigma factor1e-0962.4
NC_013947:3406000:341769134176913418221531Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeRNA polymerase sigma-24 subunit, ECF subfamily2e-0961.6
NC_015957:336500:352252352252352833582Streptomyces violaceusniger Tu 4113 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-0960.1
NC_016109:4088259:408825940882594088831573Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor7e-0959.7
NC_014815:658893:678552678552679058507Micromonospora sp. L5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily9e-0959.3
NC_014833:3268102:327741332774133277916504Ruminococcus albus 7 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit9e-0959.3
NC_019673:2155669:216213921621392162690552Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-0858.5
NC_016627:4270949:428432542843254284810486Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0858.2
NC_012796:1645856:164776616477661648332567Desulfovibrio magneticus RS-1, complete genomeRNA polymerase ECF-type sigma factor5e-0857
NC_016109:2938000:295136229513622951883522Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor5e-0857
NC_014150:1006000:102603910260391026611573Brachyspira murdochii DSM 12563 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0857
NC_011894:2811573:282499228249922825498507Methylobacterium nodulans ORS 2060, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0856.2
NC_014614:2500301:250120025012002501682483Clostridium sticklandii, complete genomeSigV1e-0755.8
NC_009615:3581619:358324535832453583757513Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor1e-0755.8
NC_004557:691944:708021708021708554534Clostridium tetani E88, complete genomeRNA polymerase sigma factor sigV1e-0755.5
NC_013947:4363250:437485543748554375406552Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeRNA polymerase sigma-24 subunit, ECF subfamily1e-0755.5
NC_015144:1576047:158985115898511590342492Weeksella virosa DSM 16922 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0754.3
NC_014391:2875553:288034328803432880780438Micromonospora aurantiaca ATCC 27029 chromosome, complete genomesigma-70 family RNA polymerase4e-0753.9
NC_009668:1726000:173066117306611731212552Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceECF subfamily RNA polymerase sigma-24 factor4e-0753.9
NC_013510:5175649:517647651764765177051576Thermomonospora curvata DSM 43183, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0753.9
NC_014033:1664500:168220716822071682704498Prevotella ruminicola 23 chromosome, complete genomeECF family RNA polymerase sigma-70 factor8e-0753.1
NC_013595:4951396:496504449650444965529486Streptosporangium roseum DSM 43021, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.8
NC_009720:251703:267010267010267516507Xanthobacter autotrophicus Py2, complete genomeECF subfamily RNA polymerase sigma-24 factor9e-0752.8
NC_009720:2945655:295479629547962955302507Xanthobacter autotrophicus Py2, complete genomeECF subfamily RNA polymerase sigma-24 factor9e-0752.8
NC_017316:2581781:258269025826902583187498Enterococcus faecalis OG1RF chromosome, complete genomeRNA polymerase sigma-70 factor1e-0652.4
NC_004668:3053119:305311930531193053616498Enterococcus faecalis V583, complete genomeRNA polymerase sigma-70 factor, ECF subfamily1e-0652.4
NC_009077:2308634:230980423098042310280477Mycobacterium sp. JLS, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.2
NC_016627:4323370:437774343777434378246504Clostridium clariflavum DSM 19732 chromosome, complete genomeRNA polymerase, sigma subunit, SigV6e-0650.1