Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4608081 Kineococcus radiotolerans SRS30216, complete genome

Start: 4608081, End: 4608686, Length: 606

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012880:2480000:249500024950002495701702Dickeya dadantii Ech703, complete genomeThiJ/PfpI domain protein1e-40166
NC_007492:2035761:205359520535952054281687Pseudomonas fluorescens PfO-1, complete genomeThiJ/PfpI5e-37154
NC_013956:1762171:177798017779801778675696Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein8e-36149
NC_008596:3404832:343870934387093439404696Mycobacterium smegmatis str. MC2 155, complete genomeisonitrile hydratase, putative3e-33141
NC_011000:1023800:102931910293191030002684Burkholderia cenocepacia J2315 chromosome 1, complete sequenceDJ-1/PfpI family protein7e-33140
NC_010804:2808676:282433228243322825015684Burkholderia multivorans ATCC 17616 chromosome 1, completeputative intracellular protease/amidase5e-28124
NC_010084:695817:699758699758700441684Burkholderia multivorans ATCC 17616 chromosome 1, completeThiJ/PfpI domain-containing protein5e-28124
NC_005125:2107088:212765221276522128500849Gloeobacter violaceus PCC 7421, complete genomeThiJ family protein8e-28123
NC_009256:3056000:306906630690663069749684Burkholderia vietnamiensis G4 chromosome 1, complete sequenceThiJ/PfpI domain-containing protein2e-27121
NC_015684:1343251:135420913542091354913705Oligotropha carboxidovorans OM5 chromosome, complete genomeThiJ/PfpI domain-containing protein8e-27120
NC_011386:2762886:276951627695162770220705Oligotropha carboxidovorans OM5, complete genomeputative isonitrile hydratase8e-27120
NC_017904:2724941:275344927534492754192744Mycobacterium sp. MOTT36Y chromosome, complete genomehypothetical protein5e-27120
NC_004578:3193490:319845031984503199280831Pseudomonas syringae pv. tomato str. DC3000, complete genomeThiJ/PfpI family protein3e-24111
NC_009832:4564752:458611045861104586943834Serratia proteamaculans 568, complete genomeThiJ/PfpI domain protein1e-23109
NC_009255:351695:363357363357364211855Burkholderia vietnamiensis G4 chromosome 2, complete sequenceThiJ/PfpI domain-containing protein5e-21100
NC_007777:3000941:302074630207463021192447Frankia sp. CcI3, complete genomeThiJ/PfpI5e-1994.4
NC_015850:110364:159869159869160393525Acidithiobacillus caldus SM-1 chromosome, complete genomeThiJ/PfpI domain-containing protein3e-1891.7
NC_018524:4988810:500711850071185007759642Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeDJ-1/PfpI family protein4e-1891.3
NC_008740:3259962:326856632685663269267702Marinobacter aquaeolei VT8, complete genomeThiJ/PfpI domain protein2e-1789
NC_014151:2312000:233071923307192331318600Cellulomonas flavigena DSM 20109 chromosome, complete genomeThiJ/PfpI domain protein8e-1580.1
NC_011000:2831183:283702428370242837785762Burkholderia cenocepacia J2315 chromosome 1, complete sequenceDJ-1/PfpI family protein2e-1479
NC_016109:327826:347961347961348593633Kitasatospora setae KM-6054, complete genomehypothetical protein8e-1477
NC_016947:70210:743867438675027642Mycobacterium intracellulare MOTT-02 chromosome, complete genomeDJ-1/PfpI family protein1e-1169.7
NC_018524:4988810:500611750061175007007891Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory helix-turn-helix s, AraC family protein2e-1168.9
NC_010084:695817:700555700555701523969Burkholderia multivorans ATCC 17616 chromosome 1, completeAraC family transcriptional regulator3e-1168.6
NC_010804:2808676:282325028232502824218969Burkholderia multivorans ATCC 17616 chromosome 1, completeAraC subfamily transcriptional regulator3e-1168.6
NC_015514:2414617:243614924361492436748600Cellulomonas fimi ATCC 484 chromosome, complete genomeThiJ/PfpI domain-containing protein4e-1168.2
NC_017249:5255967:527970452797045280351648Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein6e-1167.4
NC_014307:1855356:185757018575701858235666Ralstonia solanacearum CFBP2957 chromosome, complete genometranscriptional regulator protein, thij/pfpi7e-1167
NC_011000:1023800:1030077103007710310931017Burkholderia cenocepacia J2315 chromosome 1, complete sequenceAraC family regulatory protein7e-1167
NC_013440:8443451:845373184537318454354624Haliangium ochraceum DSM 14365, complete genomeThiJ/PfpI domain protein1e-1066.6
NC_009925:1003000:101366710136671014251585Acaryochloris marina MBIC11017, complete genomeDJ-1/PfpI family protein2e-1065.5
NC_015671:1540860:154284915428491543448600Cellvibrio gilvus ATCC 13127 chromosome, complete genomeThiJ/PfpI domain-containing protein5e-1064.3
NC_010718:2265447:229220322922032292811609Natranaerobius thermophilus JW/NM-WN-LF, complete genomeThiJ/PfpI domain protein6e-1063.9
NC_009256:3056000:306798030679803068948969Burkholderia vietnamiensis G4 chromosome 1, complete sequencetranscriptional regulator6e-1063.9
NC_008596:3404832:3437657343765734386701014Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, AraC family protein1e-0963.2
NC_015588:1965787:198411819841181984717600Isoptericola variabilis 225 chromosome, complete genomeThiJ/PfpI domain-containing protein2e-0962.8
NC_014166:2149984:215413621541362154717582Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeThiJ/PfpI domain-containing protein3e-0962
NC_016745:2280375:228821122882112288795585Oceanimonas sp. GK1 chromosome, complete genomehypothetical protein5e-0961.2
NC_006582:3827844:383926738392673839881615Bacillus clausii KSM-K16, complete genometranscriptional regulator, AraC/XylS family6e-0960.8
NC_015859:2726414:274168027416802742522843Corynebacterium variabile DSM 44702 chromosome, complete genomeThiJ/PfpI domain-containing protein8e-0960.5
NC_014550:3377834:339449033944903395332843Arthrobacter arilaitensis Re117, complete genomeputative AraC family transcriptional regulator8e-0960.5
NC_016945:370471:406223406223406801579Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein1e-0859.7
NC_012583:361241:417672417672418268597Vibrio cholerae O395 chromosome chromosome II, complete sequenceThiJ/PfpI1e-0859.7
NC_009456:787322:845674845674846270597Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein1e-0859.7
NC_002506:370629:406385406385406981597Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein1e-0859.7
NC_014323:3976351:4011751401175140127581008Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein2e-0858.9
NC_007492:2035761:205437120543712055354984Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, AraC family2e-0858.9
NC_010162:8873051:8885884888588488869001017Sorangium cellulosum 'So ce 56', complete genomeAraC family transcriptional regulator2e-0858.9
NC_016113:803268:8071748071748083401167Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencetranscriptional regulator2e-0858.9
NC_011757:5102732:512939951293995130358960Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, AraC family3e-0858.5
NC_010501:2609567:2645966264596626470211056Pseudomonas putida W619, complete genometranscriptional regulator, AraC family3e-0858.5
NC_007963:3113739:312177231217723122356585Chromohalobacter salexigens DSM 3043, complete genomeThiJ/PfpI3e-0858.5
NC_007511:3103999:3107257310725731082731017Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family3e-0858.2
NC_007952:1587500:159049115904911591489999Burkholderia xenovorans LB400 chromosome 2, complete sequencetranscriptional regulator, AraC family5e-0857.8
NC_015727:764744:769113769113769766654Cupriavidus necator N-1 plasmid BB1p, complete sequenceAraC family transcriptional regulator9e-0857
NC_008782:1277117:129423112942311295220990Acidovorax sp. JS42, complete genometranscriptional regulator, AraC family9e-0856.6
NC_016626:1825845:185472818547281855714987Burkholderia sp. YI23 plasmid byi_1p, complete sequenceAraC family transcriptional regulator1e-0756.2
NC_011757:1532047:153808115380811539046966Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, AraC family3e-0755.1
NC_012988:1777618:1803166180316618041881023Methylobacterium extorquens DM4, complete genomeAraC family transcriptional regulator3e-0755.1
NC_017904:2724941:275248027524802753430951Mycobacterium sp. MOTT36Y chromosome, complete genomehypothetical protein4e-0754.7
NC_008596:421882:4218824218824229281047Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, AraC family protein4e-0754.7
NC_011894:2385834:238993223899322390918987Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, AraC family1e-0653.5
NC_007952:1587500:1599684159968416007661083Burkholderia xenovorans LB400 chromosome 2, complete sequencetranscriptional regulator, AraC family9e-0753.5
NC_016642:1913432:1926074192607419271351062Pseudovibrio sp. FO-BEG1 chromosome, complete genomeAraC family transcriptional regulator9e-0753.5
NC_010688:673454:700564700564701337774Xanthomonas campestris pv. campestris, complete genomehypothetical protein3e-0652
NC_020388:2662947:266558126655812666159579Natronomonas moolapensis 8.8.11 complete genomeThiJ/PfpI domain protein3e-0652
NC_015953:4908069:493169249316924932666975Streptomyces sp. SirexAA-E chromosome, complete genomeAraC family transcriptional regulator3e-0651.6
NC_015580:1745918:175400517540051754982978Novosphingobium sp. PP1Y, complete genomeAraC family transcriptional regulator3e-0651.6
NC_008268:361424:369410369410370369960Rhodococcus sp. RHA1, complete genometranscriptional regulator, AraC family4e-0651.2
NC_017271:4193000:419482241948224195595774Xanthomonas campestris pv. raphani 756C chromosome, completeThiJ-PfpI family protein6e-0650.8
NC_020829:5620826:5622577562257756236831107Pseudomonas denitrificans ATCC 13867, complete genomeputative transcriptional regulator7e-0650.4
NC_013729:4835452:484434348443434845320978Kribbella flavida DSM 17836, complete genometranscriptional regulator, AraC family7e-0650.4
NC_019673:7738588:775607277560727757004933Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, AraC family7e-0650.4
NC_007952:3283394:330337633033763304356981Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, AraC family8e-0650.4
NC_016818:1963875:1976077197607719770901014Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completetranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain9e-0650.1
NC_003902:4252000:425336342533634253956594Xanthomonas campestris pv. campestris str. ATCC 33913, completeThiJ/PfpI family protein9e-0650.1
NC_008061:190287:222318222318223256939Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, AraC family9e-0650.1
NC_008543:2220698:225640822564082257346939Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, AraC family9e-0650.1