Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4541982 Kineococcus radiotolerans SRS30216, complete genome

Start: 4541982, End: 4542311, Length: 330

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019673:1584739:159396415939641594203240Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-1891.7
NC_001263:2236777:225608322560832256331249Deinococcus radiodurans R1 chromosome 1, complete sequencetranscriptional regulator, HTH_3 family1e-1891.7
NC_015673:397947:399509399509399775267Corynebacterium resistens DSM 45100 chromosome, complete genomeHTH 3 DNA-binding transcription regulator2e-1684.3
NC_014644:1275038:127642412764241276627204Gardnerella vaginalis ATCC 14019 chromosome, complete genomeDNA-binding protein3e-1063.9
NC_006624:1178243:118165711816571181854198Thermococcus kodakarensis KOD1, complete genomepredicted transcription regulator, containing DNA-binding HTH domain4e-1063.5
NC_013721:533048:559248559248559451204Gardnerella vaginalis 409-05, complete genomeDNA-binding protein5e-1063.2
NC_021184:1257722:126186812618681262077210Desulfotomaculum gibsoniae DSM 7213, complete genomeputative transcriptional regulator7e-1062.8
NC_013891:353625:355526355526355729204Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeDNA-binding protein2e-0960.8
NC_013222:432947:451669451669451863195Robiginitalea biformata HTCC2501, complete genomeDNA-binding protein4e-0960.1
NC_010366:1:461446144811198Halobacterium salinarum R1 plasmid PHS1, complete sequenceconserved hypothetical protein (encoded by ISH7/ISH24 subtype 1)1e-0858.9
NC_001869:1:461446144811198Halobacterium sp. NRC-1 plasmid pNRC100, complete sequencehypothetical protein1e-0858.9
NC_002608:1:461446144811198Halobacterium sp. NRC-1 plasmid pNRC200, complete sequencehypothetical protein1e-0858.9
NC_012914:569471:594302594302594526225Paenibacillus sp. JDR-2, complete genometranscriptional regulator, XRE family9e-0958.9
NC_016051:389776:408848408848409045198Thermococcus sp. AM4 chromosome, complete genomehypothetical protein8e-0958.9
NC_015690:3438288:344631234463123446536225Paenibacillus mucilaginosus KNP414 chromosome, complete genomeXRE family transcriptional regulator1e-0858.2
NC_017208:5124333:513953051395305139727198Bacillus thuringiensis serovar chinensis CT-43 chromosome, completePbsX family transcriptional regulator2e-0857.8
NC_015635:4097711:409942740994274099657231Microlunatus phosphovorus NM-1, complete genomeputative Xre family DNA binding protein3e-0857.4
NC_016935:3994500:400218640021864002410225Paenibacillus mucilaginosus 3016 chromosome, complete genomeXRE family transcriptional regulator2e-0857.4
NC_015416:1832759:184216318421631842387225Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein4e-0857
NC_011969:4841358:485604848560484856344297Bacillus cereus Q1 chromosome, complete genomeDNA-binding protein4e-0856.6
NC_003909:4854379:486826048682604868460201Bacillus cereus ATCC 10987, complete genomeDNA-binding protein4e-0856.6
NC_016771:4859040:487372948737294873941213Bacillus cereus NC7401, complete genomeDNA-binding protein4e-0856.6
NC_007530:4877500:489379948937994894011213Bacillus anthracis str. 'Ames Ancestor', complete genomedna-binding protein4e-0856.6
NC_003997:4876415:489367348936734893885213Bacillus anthracis str. Ames, complete genomeDNA-binding protein4e-0856.6
NC_006274:4940922:495464049546404954846207Bacillus cereus E33L, complete genomeDNA-binding protein; transcriptional regulator5e-0856.6
NC_011772:5021404:503661550366155036812198Bacillus cereus G9842, complete genomeDNA-binding protein5e-0856.6
NC_005945:4877752:489501048950104895207198Bacillus anthracis str. Sterne, complete genomeDNA-binding protein4e-0856.6
NC_012472:4908245:492191049219104922107198Bacillus cereus 03BB102, complete genomeDNA-binding protein4e-0856.6
NC_005957:4883306:489841848984184898615198Bacillus thuringiensis serovar konkukian str. 97-27, completeDNA-binding protein; transcriptional regulator4e-0856.6
NC_017200:4995075:500977850097785009975198Bacillus thuringiensis serovar finitimus YBT-020 chromosome,dna-binding protein4e-0856.6
NC_016779:4864056:487664848766484876845198Bacillus cereus F837/76 chromosome, complete genomeDNA-binding protein4e-0856.6
NC_012659:4877410:489369948936994893896198Bacillus anthracis str. A0248, complete genomeDNA-binding protein4e-0856.6
NC_012581:4882525:489612248961224896319198Bacillus anthracis str. CDC 684 chromosome, complete genomeDNA-binding protein4e-0856.6
NC_011773:4940921:495498549549854955182198Bacillus cereus AH820 chromosome, complete genomeDNA-binding protein4e-0856.6
NC_011725:5075285:508847250884725088669198Bacillus cereus B4264 chromosome, complete genomeDNA-binding protein4e-0856.6
NC_011658:4904156:492140649214064921603198Bacillus cereus AH187 chromosome, complete genomeDNA-binding protein4e-0856.6
NC_009442:1158268:117667111766711176880210Streptococcus suis 05ZYH33 chromosome, complete genomeCro/CI family transcriptional regulator7e-0856.2
NC_010184:4909183:492642149264214926618198Bacillus weihenstephanensis KBAB4, complete genometranscriptional regulator, XRE family8e-0855.8
NC_021175:2063611:207979420797942080021228Streptococcus oligofermentans AS 1.3089, complete genomeXRE family transcriptional regulator1e-0755.5
NC_004722:5057825:507101050710105071207198Bacillus cereus ATCC 14579, complete genomeTranscriptional regulator, PBSX family1e-0755.1
NC_013757:1438812:146700914670091467242234Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, XRE family1e-0755.1
NC_015977:3215770:324485332448533245053201Roseburia hominis A2-183 chromosome, complete genomehypothetical protein1e-0755.1
NC_000868:571500:595045595045595266222Pyrococcus abyssi GE5, complete genomerepressor protein, putative2e-0754.7
NC_009848:161373:172384172384172599216Bacillus pumilus SAFR-032, complete genometranscriptional regulator2e-0754.7
NC_012785:638000:655450655450655659210Kosmotoga olearia TBF 19.5.1, complete genometranscriptional regulator, XRE family3e-0754.3
NC_014393:1221000:123202512320251232225201Clostridium cellulovorans 743B chromosome, complete genometranscriptional regulator, XRE family4e-0753.5
NC_012673:785718:798074798074798280207Exiguobacterium sp. AT1b, complete genometranscriptional regulator, XRE family5e-0753.1
NC_008942:27436:409084090841114207Methanocorpusculum labreanum Z, complete genomehypothetical protein4e-0753.1
NC_009009:2286000:229863922986392298863225Streptococcus sanguinis SK36, complete genomeTranscriptional regulator, XRE family, putative2e-0651.6
NC_017167:2298962:237640023764002376648249Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1XRE family transcriptional regulator3e-0650.8
NC_014963:767034:794076794076794264189Terriglobus saanensis SP1PR4 chromosome, complete genomeXRE family transcriptional regulator3e-0650.4
NC_019748:4129500:4140905414090541420591155Stanieria cyanosphaera PCC 7437, complete genometranscriptional regulator of molybdate metabolism, XRE family3e-0650.4
NC_015519:1081539:108624910862491086506258Tepidanaerobacter sp. Re1 chromosome, complete genomehelix-turn-helix domain-containing protein6e-0649.7
NC_008025:316302:338091338091338513423Deinococcus geothermalis DSM 11300, complete genometranscriptional regulator, XRE family7e-0649.3