Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4449835 Kineococcus radiotolerans SRS30216, complete genome

Start: 4449835, End: 4451232, Length: 1398

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009480:99640:1321701321701338011632Clavibacter michiganensis subsp. michiganensis NCPPB 382, completetomatinase, endo-1,4-beta-glycosidase5e-133474
NC_014210:2638773:2649757264975726508781122Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Endo-1,4-beta-xylanase3e-46186
NC_016582:8711199:8718179871817987192551077Streptomyces bingchenggensis BCW-1 chromosome, complete genomebeta-1,4-xylanase3e-45182
NC_009328:1867971:1878226187822618792271002Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeIntra-cellular xylanase6e-44178
NC_014623:9363409:9381076938107693827041629Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeendo-1,4-beta-xylanase z6e-42172
NC_016023:915178:9397099397099407851077Bacillus coagulans 36D1 chromosome, complete genomeglycoside hydrolase family protein4e-42172
NC_013411:2739989:275453727545372755532996Geobacillus sp. Y412MC61, complete genomeEndo-1,4-beta-xylanase4e-42172
NC_014915:1880748:189447518944751895470996Geobacillus sp. Y412MC52 chromosome, complete genomeEndo-1,4-beta-xylanase4e-42172
NC_016627:2799453:2801372280137228037592388Clostridium clariflavum DSM 19732 chromosome, complete genomebeta-1,4-xylanase1e-39164
NC_016582:8711199:8719299871929987207201422Streptomyces bingchenggensis BCW-1 chromosome, complete genomebeta-1,4-xylanase7e-39162
NC_015690:977131:9806519806519817751125Paenibacillus mucilaginosus KNP414 chromosome, complete genomeendo-1,4-beta-xylanase9e-39161
NC_013158:1085937:108593710859371086923987Halorhabdus utahensis DSM 12940, complete genomeEndo-1,4-beta-xylanase1e-38160
NC_016935:976059:9833889833889845121125Paenibacillus mucilaginosus 3016 chromosome, complete genomeendo-1,4-beta-xylanase2e-38160
NC_014318:5586287:5614314561431456159481635Amycolatopsis mediterranei U32 chromosome, complete genomeglycosyl hydrolase/beta-1,4-xylanase8e-38158
NC_010162:9311465:9311465931146593125261062Sorangium cellulosum 'So ce 56', complete genomeO-glycosyl hydrolase1e-37157
NC_014392:1769803:1796734179673418005313798Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeCellulose 1,4-beta-cellobiosidase6e-37155
NC_010994:3477000:3478492347849234795651074Rhizobium etli CIAT 652, complete genomeendo-1,4-beta-xylanase protein (exopolysaccharide export)1e-36154
NC_012034:1925983:1938607193860719430434437Anaerocellum thermophilum DSM 6725, complete genomeglycoside hydrolase family 483e-35150
NC_014720:980000:1006806100680610112364431Caldicellulosiruptor kronotskyensis 2002 chromosome, completecellulose 1,4-beta-cellobiosidase3e-35150
NC_019970:929666:9354509354509364661017Thermoanaerobacterium thermosaccharolyticum M0795, complete genomebeta-1,4-xylanase3e-35149
NC_010003:225420:2398982398982430233126Petrotoga mobilis SJ95, complete genomeEndo-1,4-beta-xylanase1e-34148
NC_009437:1189432:1216344121634412194633120Caldicellulosiruptor saccharolyticus DSM 8903, complete genomecellulose 1,4-beta-cellobiosidase8e-35148
NC_011369:3022235:3022235302223530233081074Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, completeglycoside hydrolase2e-33143
NC_014206:1745203:1752005175200517532281224Geobacillus sp. C56-T3 chromosome, complete genomeendo-1,4-beta-xylanase5e-30132
NC_020210:1908000:1922732192273219239551224Geobacillus sp. GHH01, complete genomeendo-1,4-beta-xylanase5e-30132
NC_014817:1063173:1066726106672610679431218Asticcacaulis excentricus CB 48 chromosome 2, complete sequenceendo-1,4-beta-xylanase3e-28126
NC_006576:161112:1684231684231695441122Synechococcus elongatus PCC 6301, complete genomeendo-1-beta-xylanase2e-27124
NC_007604:1442500:1451255145125514523761122Synechococcus elongatus PCC 7942, complete genomeEndo-1,4-beta-xylanase1e-27124
NC_005773:5149768:5170444517044451715561113Pseudomonas syringae pv. phaseolicola 1448A, complete genomeglycosyl hydrolase, family 101e-27124
NC_007005:5367454:5371848537184853729601113Pseudomonas syringae pv. syringae B728a, complete genomeEndo-1,4-beta-xylanase2e-25117
NC_010581:2999002:3007211300721130095232313Beijerinckia indica subsp. indica ATCC 9039, complete genomeEndo-1,4-beta-xylanase7e-25115
NC_013730:7743954:7763330776333077644931164Spirosoma linguale DSM 74, complete genomeEndo-1,4-beta-xylanase8e-24112
NC_010001:4730000:4736925473692547442987374Clostridium phytofermentans ISDg, complete genomeEndo-1,4-beta-xylanase7e-1892.4
NC_014391:277555:2850832850832866931611Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeglycoside hydrolase family 10 protein2e-1790.9
NC_015966:1145974:1166222116622211677181497Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeendo-1,4-beta-xylanase3e-1687
NC_013410:3685588:3687972368797236896211650Fibrobacter succinogenes subsp. succinogenes S85 chromosome,glycoside hydrolase family protein2e-1480.9
NC_007912:4579873:4579873457987345834333561Saccharophagus degradans 2-40, complete genomeMethionine biosynthesis MetW4e-1273.2
NC_008752:3955327:396062439606243961601978Acidovorax avenae subsp. citrulli AAC00-1, complete genomeglycoside hydrolase, family 104e-1273.2
NC_014391:277555:283411283411284016606Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeglycoside hydrolase family 10 protein6e-1065.9
NC_013501:990022:1008824100882410101281305Rhodothermus marinus DSM 4252, complete genomeglycoside hydrolase family 109e-1065.5
NC_015177:2972701:3011287301128730134522166Pedobacter saltans DSM 12145 chromosome, complete genomeCarbohydrate-binding CenC domain protein5e-0962.8