Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:3685588 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
368558836877142127Thrombospondin type 3 repeat proteinQuickGO ontologyBLASTP
36877203687893174hypothetical protein
368797236896211650glycoside hydrolase family proteinQuickGO ontologyBLASTP
36898543690813960hypothetical protein
369082036930752256hypothetical proteinBLASTP
369306836956322565hypothetical proteinBLASTP
36956293696246618hypothetical protein
36962643697151888hypothetical proteinBLASTP
36971723697687516adenine phosphoribosyltransferaseQuickGO ontologyBLASTP
369768436989131230beta-ketoacyl synthaseQuickGO ontologyBLASTP
369891036996387293-oxoacyl-acyl-carrier-protein reductaseQuickGO ontologyBLASTP
36996533700123471hypothetical proteinBLASTP
370012037013701251beta-ketoacyl synthaseQuickGO ontologyBLASTP
370139737037662370exporter-like proteinQuickGO ontologyBLASTP
37037633704383621hypothetical proteinBLASTP
37043853704822438thioesterase superfamily proteinQuickGO ontologyBLASTP