Pre_GI: BLASTP Hits

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Query: NC_009439:918534:937355 Pseudomonas mendocina ymp, complete genome

Start: 937355, End: 937975, Length: 621

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010002:528529:533152533152533817666Delftia acidovorans SPH-1, complete genometranscriptional regulator, TetR family1e-22105
NC_014910:465980:472096472096472716621Alicycliphilus denitrificans BC chromosome, complete genomeregulatory protein tetr1e-21103
NC_016002:2453919:247109424710942471732639Pseudogulbenkiania sp. NH8B, complete genomeTetR family transcriptional regulator2e-21102
NC_013665:2132000:213526921352692135904636Methanocella paludicola SANAE, complete genomeTetR family transcriptional regulator3e-1995.1
NC_008752:415599:420283420283420975693Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, TetR family9e-1993.6
NC_015424:3112637:315280931528093153447639Aeromonas veronii B565 chromosome, complete genomeTetR family transcriptional regulator9e-1993.6
NC_015566:1127595:116103711610371161717681Serratia sp. AS12 chromosome, complete genomeTetR family transcriptional regulator3e-1891.7
NC_015567:1127780:116122211612221161902681Serratia sp. AS9 chromosome, complete genomeTetR family transcriptional regulator3e-1891.7
NC_008570:3220539:327467032746703275311642Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeTetR family regulatory protein2e-1685.9
NC_007947:1703326:170922317092231709855633Methylobacillus flagellatus KT, complete genometranscriptional regulator, TetR family1e-1583.2
NC_006511:3364448:336655033665503367212663Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtranscriptional repressor for envCD (acrEF) (TetR/AcrR family)9e-1166.6
NC_010067:4149298:416320141632014163884684Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1066.6
NC_004431:4319152:432716243271624327731570Escherichia coli CFT073, complete genomehypothetical protein4e-1064.7
NC_011745:3405520:341233534123353412706372Escherichia coli ED1a chromosome, complete genomehypothetical protein4e-1064.7
NC_008563:4707826:472109047210904721461372Escherichia coli APEC O1, complete genomeputative transcriptional repressor4e-1064.7
NC_017986:4790482:483635748363574836962606Pseudomonas putida ND6 chromosome, complete genomeTetR family transcriptional regulator7e-1063.9
NC_009512:2108686:213674621367462137351606Pseudomonas putida F1, complete genometranscriptional regulator, TetR family7e-1063.9
NC_010170:4409683:442852144285214429150630Bordetella petrii, complete genomePutative HTH-type transcriptional regulator, AcrR-family1e-0963.2
NC_010511:7024412:702935870293587030014657Methylobacterium sp. 4-46 chromosome, complete genomeTetR family transcriptional regulator3e-0755.1
NC_007953:572926:596866596866597480615Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, TetR family4e-0754.7
NC_012914:5225609:524926752492675249872606Paenibacillus sp. JDR-2, complete genometranscriptional regulator, TetR family4e-0754.7
NC_015125:788931:793293793293793889597Microbacterium testaceum StLB037, complete genometranscriptional regulator5e-0754.3
NC_014168:869746:906042906042906671630Segniliparus rotundus DSM 44985 chromosome, complete genomeTetR family transcriptional regulator7e-0753.9
NC_008228:816000:837355837355837951597Pseudoalteromonas atlantica T6c, complete genometranscriptional regulator, TetR family7e-0753.9
NC_016111:3865823:387004138700413870712672Streptomyces cattleya NRRL 8057, complete genomeTranscriptional regulator, TetR family1e-0653.5
NC_013510:3117837:314603831460383146595558Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, TetR family1e-0653.1
NC_016935:4367000:440472344047234405346624Paenibacillus mucilaginosus 3016 chromosome, complete genomeputative transcriptional regulator1e-0652.8
NC_008700:2788363:280763428076342808254621Shewanella amazonensis SB2B, complete genomeputative transcriptional regulator, TetR family2e-0652.8
NC_014830:3438504:348728134872813487919639Intrasporangium calvum DSM 43043 chromosome, complete genomeregulatory protein TetR2e-0652.4
NC_013799:1117750:112189411218941122469576Hydrogenobacter thermophilus TK-6, complete genometranscriptional regulator, TetR family2e-0652.4
NC_017161:1117741:112188511218851122460576Hydrogenobacter thermophilus TK-6 chromosome, complete genomeTetR family transcriptional regulator2e-0652.4
NC_008595:1911491:192312819231281923763636Mycobacterium avium 104, complete genometranscriptional regulator, TetR family protein2e-0652.4
NC_014541:2978500:299438229943822994996615Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, TetR family2e-0652.4
NC_008268:6149576:615316961531696153810642Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator, TetR family2e-0652.4
NC_013595:9994000:100114381001143810012019582Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family3e-0652
NC_013595:8553904:856484385648438565427585Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family5e-0651.2
NC_015580:1328361:132836113283611329092732Novosphingobium sp. PP1Y, complete genomeTetR family transcriptional regulator6e-0650.8