Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:608500:624048 Pseudomonas mendocina ymp, complete genome

Start: 624048, End: 624707, Length: 660

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013440:6045708:606029160602916060962672Haliangium ochraceum DSM 14365, complete genomepeptide methionine sulfoxide reductase2e-71268
NC_007645:2294553:231691023169102317557648Hahella chejuensis KCTC 2396, complete genomePeptide methionine sulfoxide reductase7e-70263
NC_007760:2126956:214490821449082145549642Anaeromyxobacter dehalogenans 2CP-C, complete genomepeptide methionine sulfoxide reductase7e-68256
NC_009667:1371924:138960613896061390262657Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencemethionine sulfoxide reductase A2e-67255
NC_016112:3190891:319557931955793196211633Methylomicrobium alcaliphilum chromosome, complete genomepeptide methionine sulfoxide reductase2e-65248
NC_015957:1070500:108866810886681089354687Streptomyces violaceusniger Tu 4113 chromosome, complete genomepeptide methionine sulfoxide reductase msrA1e-64246
NC_016582:5393568:540009854000985400784687Streptomyces bingchenggensis BCW-1 chromosome, complete genomePeptide-methionine (S)-S-oxide reductase2e-64245
NC_008278:6717485:672533867253386726039702Frankia alni ACN14a, complete genomepeptide methionine sulfoxide reductase4e-64244
NC_013595:606096:609759609759610448690Streptosporangium roseum DSM 43021, complete genomePeptide-methionine (S)-S-oxide reductase1e-62239
NC_017093:835260:850608850608851273666Actinoplanes missouriensis 431, complete genomeputative peptide methionine sulfoxide reductase8e-62236
NC_016642:990058:994690994690995349660Pseudovibrio sp. FO-BEG1 chromosome, complete genomemethionine sulfoxide reductase A2e-60232
NC_012880:913698:928919928919929557639Dickeya dadantii Ech703, complete genomepeptide methionine sulfoxide reductase5e-60230
NC_002488:1812696:184278718427871843437651Xylella fastidiosa 9a5c, complete genomemethionine sulfoxide reductase A1e-58226
NC_013282:3781149:380217438021743802812639Cronobacter turicensis, complete genomePeptide methionine sulfoxide reductase msrA2e-58225
NC_009348:2738742:275293327529332753565633Aeromonas salmonicida subsp. salmonicida A449, complete genomepeptide methionine sulfoxide reductase3e-58224
NC_014121:598669:617476617476618012537Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completemethionine sulfoxide reductase A1e-53209
NC_011184:325797:329866329866330444579Vibrio fischeri MJ11 chromosome I, complete sequencepeptide-methionine (S)-S-oxide reductase2e-51201
NC_005071:523423:542962542962543681720Prochlorococcus marinus str. MIT 9313, complete genomePeptide methionine sulfoxide reductase7e-51200
NC_008820:1543347:155324715532471553966720Prochlorococcus marinus str. MIT 9303, complete genomePeptide methionine sulfoxide reductase1e-50199
NC_013947:1570000:158045915804591581034576Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepeptide methionine sulfoxide reductase4e-50197
NC_013172:953772:958115958115958837723Brachybacterium faecium DSM 4810, complete genomemethionine-S-sulfoxide reductase2e-46185
NC_013947:1011899:1012447101244710140061560Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepeptide methionine sulfoxide reductase6e-40164
NC_007355:3580100:359843835984383598983546Methanosarcina barkeri str. fusaro chromosome 1, complete sequencemethionine sulfoxide reductase A1e-35149
NC_015846:531984:549554549554550117564Capnocytophaga canimorsus Cc5 chromosome, complete genomepeptide-methionine (S)-S-oxide reductase3e-33141
NC_010546:2711929:272855327285532729032480Cyanothece sp. ATCC 51142 chromosome circular, complete sequencepeptide methionine sulfoxide reductase4e-33140
NC_015703:2281479:230144523014452302098654Runella slithyformis DSM 19594 chromosome, complete genomepeptide methionine sulfoxide reductase msrA6e-32137
NC_003030:95918:959189591896406489Clostridium acetobutylicum ATCC 824, complete genomemethionine sulfoxide reductase A5e-32137
NC_015687:95918:959189591896406489Clostridium acetobutylicum DSM 1731 chromosome, complete genomemethionine sulfoxide reductase A5e-32137
NC_017295:95919:959199591996407489Clostridium acetobutylicum EA 2018 chromosome, complete genomemethionine sulfoxide reductase A5e-32137
NC_010003:528855:544981544981545502522Petrotoga mobilis SJ95, complete genomepeptide methionine sulfoxide reductase4e-31134
NC_005791:837505:839898839898840371474Methanococcus maripaludis S2, complete genomeprotein methionine-S-oxide reductase6e-31134
NC_015847:909938:912316912316912789474Methanococcus maripaludis XI chromosome, complete genomepeptide methionine sulfoxide reductase1e-30132
NC_007298:3764048:378354137835413784089549Dechloromonas aromatica RCB, complete genomeMethionine sulfoxide reductase A2e-30132
NC_014935:1223817:124750812475081248038531Nitratifractor saLSUginis DSM 16511 chromosome, complete genomepeptide methionine sulfoxide reductase9e-30130
NC_010002:3357752:337978233797823380531750Delftia acidovorans SPH-1, complete genomepeptide methionine sulfoxide reductase7e-29127
NC_009718:799431:814953814953815813861Fervidobacterium nodosum Rt17-B1, complete genomebifunctional methionine sulfoxide reductase B/A protein7e-29127
NC_017275:342000:342398342398343027630Sulfolobus islandicus HVE10/4 chromosome, complete genomemethionine sulfoxide reductase A6e-29127
NC_009975:1682000:170062117006211701094474Methanococcus maripaludis C6, complete genomepeptide methionine sulfoxide reductase8e-29126
NC_008554:3177723:318021831802183180889672Syntrophobacter fumaroxidans MPOB, complete genomepeptide methionine sulfoxide reductase2e-28125
NC_012470:580373:579867579867580376510Streptococcus equi subsp. zooepidemicus, complete genomepeptide methionine sulfoxide reductase2e-28125
NC_013199:1407742:141276114127611413279519Lactobacillus rhamnosus Lc 705, complete genomePeptide methionine sulfoxide reductase (msrA) / Peptide Met(O) reductase3e-28125
NC_008529:887008:901002901002901571570Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completePeptide methionine sulfoxide reductase6e-28124
NC_008529:906576:957847957847958416570Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completePeptide methionine sulfoxide reductase6e-28124
NC_014355:399938:418371418371418916546Candidatus Nitrospira defluvii, complete genomemethionine sulfoxide reductase A2e-27122
NC_009256:2945059:295211129521112952701591Burkholderia vietnamiensis G4 chromosome 1, complete sequencepeptide methionine sulfoxide reductase2e-27122
NC_015185:792933:798463798463799014552Desulfurobacterium thermolithotrophum DSM 11699 chromosome,peptide methionine sulfoxide reductase msrA3e-27121
NC_015516:1801500:180312718031271803669543Melissococcus plutonius ATCC 35311, complete genomepeptide methionine sulfoxide reductase MsrA8e-27120
NC_016938:336000:350457350457350999543Melissococcus plutonius DAT561 chromosome 1, complete genomepeptide methionine sulfoxide reductase MsrA8e-27120
NC_009455:1025915:105059510505951051131537Dehalococcoides sp. BAV1 chromosome, complete genomepeptide methionine sulfoxide reductase7e-27120
NC_009725:2072475:209560120956012096134534Bacillus amyloliquefaciens FZB42, complete genomeMsrA6e-27120
NC_020410:2068500:208840920884092088942534Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completePeptide methionine sulfoxide reductase MsrA6e-27120
NC_019842:2134803:215362221536222154155534Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,methionine sulfoxide reductase A6e-27120
NC_015422:3366500:336919033691903369738549Alicycliphilus denitrificans K601 chromosome, complete genomepeptide methionine sulfoxide reductase4e-26118
NC_017192:2153461:215483721548372155319483Arcobacter sp. L, complete genomepeptide methionine sulfoxide reductase3e-26118
NC_015589:3852217:387335638733563873913558Desulfotomaculum ruminis DSM 2154 chromosome, complete genomepeptide methionine sulfoxide reductase3e-26118
NC_014829:4016000:403279640327964033755960Bacillus cellulosilyticus DSM 2522 chromosome, complete genomemethionine-R-sulfoxide reductase3e-26118
UCMB5137:1676568:169114416911441691677534Bacillus atrophaeus UCMB-5137methionine sulfoxide reductase A2e-26118
NC_011206:2512667:253249725324972533132636Acidithiobacillus ferrooxidans ATCC 53993, complete genomepeptide methionine sulfoxide reductase2e-26118
NC_000911:240863:263321263321263965645Synechocystis sp. PCC 6803, complete genomemethionine sulfoxide reductase A9e-26117
NC_017039:240863:263321263321263965645Synechocystis sp. PCC 6803 substr. PCC-P, complete genomemethionine sulfoxide reductase A9e-26117
NC_017052:240851:263309263309263953645Synechocystis sp. PCC 6803 substr. PCC-N, complete genomemethionine sulfoxide reductase A9e-26117
NC_017277:240863:263321263321263965645Synechocystis sp. PCC 6803, complete genomemethionine sulfoxide reductase A9e-26117
NC_008573:195317:223573223573224061489Shewanella sp. ANA-3 plasmid 1, complete sequencepeptide methionine sulfoxide reductase6e-26117
NC_008260:3053775:3056820305682030578811062Alcanivorax borkumensis SK2, complete genomepeptide methionine sulfoxide reductase9e-26116
NC_009656:115390:136066136066136605540Pseudomonas aeruginosa PA7 chromosome, complete genomemethionine sulfoxide reductase A3e-25115
NC_013093:4890557:489334448933444893847504Actinosynnema mirum DSM 43827, complete genomepeptide methionine sulfoxide reductase3e-25115
NC_014834:4644047:466512346651234665833711Rhodopseudomonas palustris DX-1 chromosome, complete genomepeptide methionine sulfoxide reductase7e-25114
NC_015563:3203012:322023732202373220770534Delftia sp. Cs1-4 chromosome, complete genomepeptide methionine sulfoxide reductase msrA7e-25114
NC_009720:3281000:328992832899283290440513Xanthobacter autotrophicus Py2, complete genomemethionine sulfoxide reductase A7e-25114
NC_005296:4574213:460743046074304608041612Rhodopseudomonas palustris CGA009, complete genomemethionine sulfoxide reductase A5e-25114
NC_011004:4947980:496295449629544963664711Rhodopseudomonas palustris TIE-1, complete genomepeptide methionine sulfoxide reductase4e-25114
NC_010610:908452:932377932377932916540Lactobacillus fermentum IFO 3956, complete genomepeptide methionine sulfoxide reductase2e-24112
NC_014761:1981435:200164420016442002168525Oceanithermus profundus DSM 14977 chromosome, complete genomepeptide methionine sulfoxide reductase2e-24112
NC_012856:798922:812454812454813041588Ralstonia pickettii 12D chromosome 1, complete genomepeptide methionine sulfoxide reductase2e-24112
NC_007681:848084:848084848084849055972Methanosphaera stadtmanae DSM 3091, complete genomeputative peptide methionine sulfoxide reductase MsrA/MsrB3e-24111
NC_021184:1257722:125898812589881259962975Desulfotomaculum gibsoniae DSM 7213, complete genomemethionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase7e-24110
NC_016023:3391116:341381634138163414346531Bacillus coagulans 36D1 chromosome, complete genomepeptide methionine sulfoxide reductase7e-24110
NC_008573:195317:215086215086215586501Shewanella sp. ANA-3 plasmid 1, complete sequencepeptide methionine sulfoxide reductase6e-24110
NC_007974:1007834:102096510209651021471507Ralstonia metallidurans CH34 chromosome 2, complete sequencepeptide methionine sulfoxide reductase6e-24110
NC_016779:1688946:169851916985191699055537Bacillus cereus F837/76 chromosome, complete genomePeptide methionine sulfoxide reductase MsrA2e-23109
NC_020541:1510782:151280615128061513486681Rhodanobacter sp. 2APBS1, complete genomemethionine-S-sulfoxide reductase2e-23108
NC_011969:1816746:182386818238681824404537Bacillus cereus Q1 chromosome, complete genomepeptide methionine sulfoxide reductase2e-23108
NC_010557:207846:226457226457227197741Burkholderia ambifaria MC40-6 chromosome 3, complete sequencepeptide methionine sulfoxide reductase2e-23108
NC_009659:1050532:106952410695241070030507Janthinobacterium sp. Marseille chromosome, complete genomemethionine sulfoxide reductase A2e-23108
NC_006055:44649:648636486365354492Mesoplasma florum L1, complete genomemethionine sulfoxide reductase A4e-23107
NC_017342:1848031:188930918893091889842534Staphylococcus aureus subsp. aureus TCH60 chromosome, completepeptide-methionine-(S)-S-oxide reductase6e-23107
NC_007492:2629350:264727526472752647781507Pseudomonas fluorescens PfO-1, complete genomemethionine sulfoxide reductase A1e-22106
NC_011772:1684404:170787617078761708412537Bacillus cereus G9842, complete genomepeptide methionine sulfoxide reductase1e-22106
NC_011365:1865687:187837718783771879096720Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomepeptide methionine sulfoxide reductase9e-23106
NC_009254:74000:740417404174784744Burkholderia vietnamiensis G4 chromosome 3, complete sequencemethionine sulfoxide reductase A9e-23106
NC_015376:1185000:119861811986181199373756Burkholderia gladioli BSR3 chromosome chromosome 2, completePeptide methionine sulfoxide reductase3e-21101
NC_013922:331847:334886334886335551666Natrialba magadii ATCC 43099 chromosome, complete genomepeptide methionine sulfoxide reductase2e-2099.4
NC_011916:1180973:119773511977351198325591Caulobacter crescentus NA1000 chromosome, complete genomepeptide methionine sulfoxide reductase2e-2099
NC_002696:1154996:117175811717581172348591Caulobacter crescentus CB15, complete genomepeptide methionine sulfoxide reductase2e-2099
NC_012466:590883:5908835908835919951113Streptococcus pneumoniae JJA, complete genomepeptide methionine sulfoxide reductase MsrA/msrB5e-2097.8
NC_003098:586941:5869415869415880531113Streptococcus pneumoniae R6, complete genomebifunctional methionine sulfoxide reductase A/B protein5e-2097.8
NC_014494:614809:6194256194256205371113Streptococcus pneumoniae AP200 chromosome, complete genomepeptide methionine sulfoxide reductase4e-2097.8
NC_015875:646000:6485506485506496621113Streptococcus pseudopneumoniae IS7493 chromosome, complete genomepeptide methionine sulfoxide reductase8e-2097.1
NC_008533:592000:594649594649595584936Streptococcus pneumoniae D39, complete genomepeptide methionine sulfoxide reductase msrA/msrB 22e-1995.9
NC_004606:623853:6238536238536249591107Streptococcus pyogenes SSI-1, complete genomebifunctional methionine sulfoxide reductase A/B protein3e-1995.1
NC_014656:1536540:155036015503601551334975Bifidobacterium longum subsp. longum BBMN68 chromosome, completepeptide methionine sulfoxide reductase-like protein4e-1994.7
NC_013171:636293:642746642746643234489Anaerococcus prevotii DSM 20548, complete genomepeptide methionine sulfoxide reductase1e-1893.6
NC_007492:3180480:320258132025813203048468Pseudomonas fluorescens PfO-1, complete genomeProtein-methionine-S-oxide reductase2e-1892.8
NC_013192:305478:3211423211423222211080Leptotrichia buccalis DSM 1135, complete genomemethionine-R-sulfoxide reductase7e-1787.4
NC_012806:105133:109878109878110384507Mycoplasma conjunctivae, complete genomePeptide methionine sulfoxide reductase msrA2e-1685.9
NC_014388:55903:559035590356388486Butyrivibrio proteoclasticus B316 chromosome 2, complete genomepeptide methionine sulfoxide reductase MsrA2e-1685.9
NC_019962:1875952:187973518797351880352618Natrinema pellirubrum DSM 15624, complete genomepeptide methionine sulfoxide reductase2e-1685.5
NC_008573:195317:221669221669222331663Shewanella sp. ANA-3 plasmid 1, complete sequenceMethionine sulfoxide reductase A2e-1582.8
NC_010520:1586000:158749815874981588136639Clostridium botulinum A3 str. Loch Maree, complete genomeputative methionine-S-sulfoxide reductase4e-1581.6
NC_013037:1072266:108060710806071081113507Dyadobacter fermentans DSM 18053, complete genomeMethionine sulfoxide reductase A3e-0755.1
NC_017353:152151:168428168428168907480Staphylococcus lugdunensis N920143, complete genomehypothetical protein1e-0653.1