Pre_GI: BLASTP Hits

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Query: NC_009089:581655:603157 Clostridium difficile 630, complete genome

Start: 603157, End: 603582, Length: 426

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016630:1247251:124944212494421249867426Filifactor alocis ATCC 35896 chromosome, complete genomesigma-70, region 4 superfamily3e-74276
NC_013895:1332832:135403613540361354458423Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completesigma-70, region 43e-66249
NC_021175:1597613:160767016076701608092423Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein3e-66249
NC_012658:3678000:368489736848973685439543Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein4e-48189
NC_017341:428500:429045429045429527483Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,Sigma-70 Region 4 protein2e-47187
NC_002758:434462:438216438216438698483Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein2e-47187
NC_017347:424500:425383425383425805423Staphylococcus aureus subsp. aureus T0131 chromosome, completeSigma-70 Region 4 protein2e-47187
NC_009089:3889811:389315038931503893572423Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein2e-36151
NC_013316:2033906:207145420714542071891438Clostridium difficile R20291, complete genomehypothetical protein3e-28123
NC_009089:428075:430953430953431381429Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein1e-26118
NC_009089:3935500:394063139406313941047417Clostridium difficile 630, complete genomeconjugative transposon protein4e-22103
NC_009089:1283000:128664312866431287083441Clostridium difficile 630, complete genomeconjugative transposon protein5e-1683.2
NC_015385:2050648:207557320755732076127555Treponema succinifaciens DSM 2489 chromosome, complete genomeRNA polymerase sigma factor, sigma-70 family3e-1373.6
NC_017179:4023139:405102240510224051312291Clostridium difficile BI1, complete genomehypothetical protein2e-1167.8
NC_013315:4015119:404286440428644043292429Clostridium difficile CD196 chromosome, complete genomehypothetical protein4e-1166.6
NC_013316:4095905:412365041236504124078429Clostridium difficile R20291, complete genomehypothetical protein4e-1166.6
NC_016077:702000:706944706944707390447Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein3e-0650.8