Pre_GI: BLASTP Hits

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Query: NC_009089:3889811:3895428 Clostridium difficile 630, complete genome

Start: 3895428, End: 3896003, Length: 576

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012914:5618000:562233156223315622906576Paenibacillus sp. JDR-2, complete genomeputative transcriptional regulator, TetR family9e-22103
NC_014976:170683:192657192657193232576Bacillus subtilis BSn5 chromosome, complete genomeputative transcriptional regulator1e-1995.9
NC_005957:4757215:476149647614964762053558Bacillus thuringiensis serovar konkukian str. 97-27, completeprobable transcriptional regulator, TetR family9e-1786.7
NC_010184:4791000:479359347935934794150558Bacillus weihenstephanensis KBAB4, complete genomeputative transcriptional regulator, TetR family2e-1685.5
NC_017200:4814000:481716748171674817724558Bacillus thuringiensis serovar finitimus YBT-020 chromosome,transcriptional regulator2e-1685.5
NC_006274:4814601:481925548192554819803549Bacillus cereus E33L, complete genomeprobable transcriptional regulator, TetR family2e-1685.5
NC_021182:2360500:237413723741372374709573Clostridium pasteurianum BC1, complete genometranscriptional regulator3e-1685.1
NC_003909:4737882:474151347415134742070558Bacillus cereus ATCC 10987, complete genometranscriptional regulator, putative2e-1685.1
NC_011658:4739951:474423247442324744789558Bacillus cereus AH187 chromosome, complete genomeTetR family transcriptional regulator2e-1685.1
NC_011969:4680836:468511946851194685676558Bacillus cereus Q1 chromosome, complete genomeTetR family transcriptional regulator2e-1685.1
NC_016771:4692772:469808946980894698646558Bacillus cereus NC7401, complete genometranscriptional regulator2e-1685.1
NC_017208:4996992:500099150009915001539549Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeTetR family transcriptional regulator3e-1684.7
NC_011773:4807911:481152648115264812074549Bacillus cereus AH820 chromosome, complete genomeputative transcriptional regulator4e-1684.3
NC_011725:4944072:494703849470384947586549Bacillus cereus B4264 chromosome, complete genometranscriptional regulator6e-1684
NC_014335:4697293:470339247033924703940549Bacillus cereus biovar anthracis str. CI chromosome, completeputative TetR family transcriptional regulator1e-1583.2
NC_012659:4745053:475055847505584751106549Bacillus anthracis str. A0248, complete genomeputative transcriptional regulator2e-1582.4
NC_005945:4747740:475186747518674752415549Bacillus anthracis str. Sterne, complete genometranscriptional regulator, putative2e-1582.4
NC_003997:4745027:475053247505324751080549Bacillus anthracis str. Ames, complete genometranscriptional regulator, putative2e-1582.4
NC_007530:4744870:475065847506584751206549Bacillus anthracis str. 'Ames Ancestor', complete genometranscriptional regulator, putative2e-1582.4
NC_014828:1632000:164578416457841646359576Ethanoligenens harbinense YUAN-3 chromosome, complete genomeregulatory protein TetR2e-1582
NC_004722:4899940:490290549029054903456552Bacillus cereus ATCC 14579, complete genomeTranscriptional regulator, TetR family2e-1581.6
NC_014171:4812340:481530848153084815856549Bacillus thuringiensis BMB171 chromosome, complete genomeTetR family transcriptional regulator8e-1580.1
UCMB5137:1594000:161036616103661610926561Bacillus atrophaeus UCMB-5137putative transcriptional regulator6e-1477
NC_020291:4033000:403351640335164034100585Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, TetR family2e-1168.9
NC_016109:954538:970248970248970856609Kitasatospora setae KM-6054, complete genomeputative TetR family transcriptional regulator2e-0859.3
NC_019673:6473743:647426064742606474844585Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, TetR family3e-0858.5