Pre_GI: BLASTP Hits

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Query: NC_009089:370555:370555 Clostridium difficile 630, complete genome

Start: 370555, End: 371283, Length: 729

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:371953:371953371953372681729Clostridium difficile R20291, complete genomeputative phosphoserine phosphatase2e-138491
NC_017295:279633:295405295405296148744Clostridium acetobutylicum EA 2018 chromosome, complete genomePhosphoserine phosphatase related protein3e-77288
NC_003030:279643:295415295415296158744Clostridium acetobutylicum ATCC 824, complete genomePhosphoserine phosphatase related protein3e-77288
NC_015687:279641:295413295413296156744Clostridium acetobutylicum DSM 1731 chromosome, complete genomephosphoserine phosphatase-like protein3e-77288
NC_021182:93000:133382133382134110729Clostridium pasteurianum BC1, complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014904e-72271
NC_014633:655693:673639673639674355717Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceHAD-superfamily hydrolase4e-69261
NC_016582:7101701:710170171017017102537837Streptomyces bingchenggensis BCW-1 chromosome, complete genomemorphological differentiation-associated protein1e-1376.6
NC_011979:589874:593387593387594106720Geobacter sp. FRC-32, complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014901e-1273.6
NC_014391:421547:436794436794437600807Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeHAD-superfamily hydrolase3e-1272.4
NC_002944:4446083:445411044541104455021912Mycobacterium avium subsp. paratuberculosis K-10, complete genomeSerB5e-1271.2
NC_003155:5616000:562228656222865623119834Streptomyces avermitilis MA-4680, complete genomemorphological differentiation-associated protein5e-1168.2
NC_016906:3286384:3305667330566733071541488Gordonia polyisoprenivorans VH2 chromosome, complete genome1-acyl-sn-glycerol-3-phosphate acyltransferase8e-1167.4
NC_016114:3938721:394742439474243948263840Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeHAD-superfamily hydrolase9e-1167.4
NC_011896:1462258:1484313148431314860521740Mycobacterium leprae Br4923, complete genomeputative transferase2e-1066.2
NC_002677:1462233:1484289148428914860281740Mycobacterium leprae TN, complete genomepossible transferase2e-1066.2
NC_012207:2747599:2745860274586027476021743Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative transmembrane phospholipid biosynthesis enzyme2e-0962.8
NC_002945:2757821:2756082275608227578241743Mycobacterium bovis AF2122/97, complete genomebifunctionnal putative L-3-phosphoserine phosphatase/1-acyl-SN-glycerol-3-phosphate acyltransferase2e-0962.8
NC_008769:2754828:2753089275308927548311743Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative transmembrane phospholipid biosynthesis bifunctionnal enzyme plsC: putative l-3-phosphoserine phosphatase + 1-ACYL-SN-GLYCEROL-3-PHOSPHATE AC2e-0962.8
NC_000962:2791019:2789280278928027910221743Mycobacterium tuberculosis H37Rv, complete genomePOSSIBLE TRANSMEMBRANE PHOSPHOLIPID BIOSYNTHESIS BIFUNCTIONNAL ENZYME PLSC: PUTATIVE L-3-PHOSPHOSERINE PHOSPHATASE (O-PHOSPHOSERINE PHOSPHOHYDROLASE) 3e-0962.4
NC_009525:2802987:2801248280124828029901743Mycobacterium tuberculosis H37Ra, complete genomebifunctional transmembrane phospholipid biosynthesis enzyme PlsC3e-0962.4
NC_005125:3420270:342027034202703421040771Gloeobacter violaceus PCC 7421, complete genomehypothetical protein1e-0860.5
NC_002163:1354215:137205613720561372691636Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomehypothetical protein9e-0960.5
NC_011768:3854455:385588038558803856542663Desulfatibacillum alkenivorans AK-01, complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014904e-0858.2
NC_016111:6175975:618444561844456185143699Streptomyces cattleya NRRL 8057, complete genomehypothetical protein1e-0653.5
NC_016612:443398:449628449628450278651Klebsiella oxytoca KCTC 1686 chromosome, complete genomeHAD superfamily hydrolase6e-0651.2
NC_013960:3379515:338517133851713385836666Nitrosococcus halophilus Nc4 chromosome, complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014907e-0651.2